Deep sequencing reads for stem-loop sequence MI0006298

Stem-loop ID mmu-mir-1193
Reads 
                                           mmu-miR-1193-5p                   mmu-miR-1193-3p                               Count     RPM (mean number of reads per million)
.......................GUUCUCGGGGUAGCUGUGUGGA............................................................................  2         0.00674
.......................GUUCUCGGGGUAGCUGUGUGG.............................................................................  1         0.00688
........................UUCUCGGGGUAGCUGUGUGGA............................................................................  1         0.00688
...........................UCGGGGUAGCUGUGUGGA............................................................................  6         0.0901
...........................................GAUGGUAGACCGGUGACGUACA........................................................  3         0.0162
...........................................GAUGGUAGACCGGUGACGUAC.........................................................  2         0.00572
............................................AUGGUAGACCGGUGACGUACA........................................................  286       1.65
............................................AUGGUAGACCGGUGACGUAC.........................................................  81        0.585
............................................AUGGUAGACCGGUGACGUA..........................................................  7         0.0294
............................................AUGGUAGACCGGUGACGUACAC.......................................................  1         0.00195
.............................................UGGUAGACCGGUGACGUACA........................................................  133       1.38
.............................................UGGUAGACCGGUGACGUACACU......................................................  133       1.41
.............................................UGGUAGACCGGUGACGUACAC.......................................................  40        0.359
.............................................UGGUAGACCGGUGACGUAC.........................................................  30        0.427
.............................................UGGUAGACCGGUGACGUACACUUC....................................................  4         0.0444
.............................................UGGUAGACCGGUGACGUACACUUCAU..................................................  4         0.141
.............................................UGGUAGACCGGUGACGUACACUUCA...................................................  1         0.0084
..............................................GGUAGACCGGUGACGUACAC.......................................................  1         0.00195
.............................................................................UGUAGGUCACCCGUUUUACUA.......................  4         0.0824
.............................................................................UGUAGGUCACCCGUUUUAC.........................  1         0.00424
.............................................................................UGUAGGUCACCCGUUUUACUAUC.....................  1         0.00479
.............................................................................UGUAGGUCACCCGUUUUACUAU......................  1         0.00688
..............................................................................GUAGGUCACCCGUUUUACUAUC.....................  2         0.00958
...............................................................................UAGGUCACCCGUUUUACUAUC.....................  350       6.78
...............................................................................UAGGUCACCCGUUUUACUAUCC....................  87        1.36
...............................................................................UAGGUCACCCGUUUUACUAU......................  41        0.57
...............................................................................UAGGUCACCCGUUUUACU........................  10        0.4
...............................................................................UAGGUCACCCGUUUUACUA.......................  7         0.756
...............................................................................UAGGUCACCCGUUUUAC.........................  2         0.0363
...............................................................................UAGGUCACCCGUUUUACUAUCCA...................  1         0.0181
................................................................................AGGUCACCCGUUUUACUAUC.....................  4         0.0835
................................................................................AGGUCACCCGUUUUACUAU......................  4         0.0771
.................................................................................GGUCACCCGUUUUACUAUCC....................  6         0.0674
.................................................................................GGUCACCCGUUUUACUAUC.....................  4         0.0364
CUGAAGGGACAAUGAUGCCCACUGUUCUCGGGGUAGCUGUGUGGAUGGUAGACCGGUGACGUACACUUCAUUUAUGCUGUAGGUCACCCGUUUUACUAUCCACCAACACCCAGACCAUCUG
.....(((.((....)))))..((.(((..((((.(.((.(((((((((((((.((((((.(((((.........).)))).)))))).).)))))))))))))).)))))))).)).... (-45.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 3ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 3ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000036 4brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 5brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 12brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000040 36brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 2whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 10whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 8whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000045 28whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 34whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 34whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 30whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 29whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 44whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 26whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 97whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 11embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 77embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 95embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 9embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000058 3embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 5embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 5embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 6embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000221 2spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 2spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000235 20bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 23spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000238 1spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000244 340spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 130 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 180 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 11brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000253 1kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000255 31skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 22skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 5salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000259 5ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).