Deep sequencing reads for stem-loop sequence MI0005998

Stem-loop ID

ppt-MIR1039

Reads

                            ppt-miR1039-5p                                        ppt-miR1039-3p                                    Count     RPM (mean number of reads per million)
........................UAGGGUCUUUGGGUCUUUCUC.....................................................................................  1         3.98
.............................UCUUUGGGUCUUUCUCUCCUG................................................................................  6         23.1
.............................UCUUUGGGUCUUUCUCUCCUGA...............................................................................  1         16
...................................................................AGCGCUUAAUUUUUCAGGGGAGA........................................  1         3.23
...................................................................................GGGGAGACGGGCUCAAGGAUC..........................  3         11.9
.......................................................................................AGACGGGCUCAAGGAUCUUGA......................  1         3.98
AGGAGCUUAUUGUGUCAGCCACAUUAGGGUCUUUGGGUCUUUCUCUCCUGAAAAUGUUAAGAGCUUGAGCGCUUAAUUUUUCAGGGGAGACGGGCUCAAGGAUCUUGAAGUGGUUGCCUGGGGAUGAUAA
.....(((...(.(.(((((((.(((((((((((((((((.(((((((((((((.((((((.((....)).))))))))))))))))))).))))))))))))))))).)))))))))..)))....... (-63.60)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	9	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	14	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	5	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).