Deep sequencing reads for stem-loop sequence MI0005971

Stem-loop ID

ppt-MIR1028a

Reads

                           ppt-miR1028a-5p                                                                                                                                                    ppt-miR1028a-3p                                    Count     RPM (mean number of reads per million)
......................UUCCAGCUCUUAGAUCUACA.....................................................................................................................................................................................................  1         3.23
..........................AGCUCUUAGAUCUACAAUGUC................................................................................................................................................................................................  2         6.46
.............................UCUUAGAUCUACAAUGUCACA.............................................................................................................................................................................................  361       1.27e+03
.............................UCUUAGAUCUACAAUGUCA...............................................................................................................................................................................................  1         3.23
..............................CUUAGAUCUACAAUGUCACA.............................................................................................................................................................................................  2         6.46
..............................CUUAGAUCUACAAUGUCACAU............................................................................................................................................................................................  1         3.23
...............................................................................................................................................................................................GUGACAUUGUAGAUCUACGUGC..........................  1         3.23
................................................................................................................................................................................................UGACAUUGUAGAUCUACGUGC..........................  180       581
................................................................................................................................................................................................UGACAUUGUAGAUCUACGUGCC.........................  4         12.9
................................................................................................................................................................................................UGACAUUGUAGAUCUACGUG...........................  3         9.68
..................................................................................................................................................................................................ACAUUGUAGAUCUACGUGC..........................  1         3.23
ACCCGAUUUACCUUCACAUCUGUUCCAGCUCUUAGAUCUACAAUGUCACAUGAACACAUACUUGGUAACGAAUCUGGCAGUAAGACUUCAUUUAUAUGGGUCCAUUCCGCUCCAAGCUUUCACAUCUGUGACAGAUUUAGCAAUAUAGUGAAAAUCUGACCGUUGGUGAUGCAACUGAAGCAAGUUUUCACGUGACAUUGUAGAUCUACGUGCCGGAUUAGUGGUGAAAGCCUCAAGUU
............(((((..(((.(((.((.(.(((((((((((((((((.((((.....(((((.(........(((.(((..((((.(((....)))))))......)))))).((..((((...((.(.(((((((.((......))..))))))).)))...)))).))......).))))).)))).))))))))))))))))).).)).))).)))..)))))........... (-70.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	230	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	180	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	664	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).