Deep sequencing reads for stem-loop sequence MI0005935

Stem-loop ID

ppt-MIR537c

Reads

                                                                                                                           ppt-miR537c                Count     RPM (mean number of reads per million)
.......UGGACUGUAGAAACACCUGAAG........................................................................................................................  1         3.98
.........GACUGUAGAAACACCUGA..........................................................................................................................  46        179
.........GACUGUAGAAACACCUGAAG........................................................................................................................  25        95.8
.........GACUGUAGAAACACCUGAA.........................................................................................................................  12        46.3
.........GACUGUAGAAACACCUGAAGU.......................................................................................................................  4         15.9
.........GACUGUAGAAACACCUG...........................................................................................................................  1         3.98
...........CUGUAGAAACACCUGAAGU.......................................................................................................................  1         3.98
............UGUAGAAACACCUGAAGU.......................................................................................................................  1         3.98
............UGUAGAAACACCUGAAG........................................................................................................................  1         3.98
...................................................................................................AACCGGUGCAAGCUUCAAGCU.............................  1         3.23
......................................................................................................CGGUGCAAGCUUCAAGCU.............................  1         3.23
................................................................................................................UUCAAGCUCUUGAGGUGUUUC................  146       563
................................................................................................................UUCAAGCUCUUGAGGUGUUUCU...............  14        49
................................................................................................................UUCAAGCUCUUGAGGUGUUUCUAC.............  1         3.23
.................................................................................................................UCAAGCUCUUGAGGUGUUUCU...............  244       977
.................................................................................................................UCAAGCUCUUGAGGUGUUUC................  1         3.98
..................................................................................................................CAAGCUCUUGAGGUGUUUCU...............  2         7.21
....................................................................................................................AGCUCUUGAGGUGUUUCUACA............  1         3.23
.......................................................................................................................UCUUGAGGUGUUUCUACAGGCU........  2         19.3
........................................................................................................................CUUGAGGUGUUUCUACAGGCU........  4         15.9
........................................................................................................................CUUGAGGUGUUUCUACAGGCUA.......  3         10.4
.........................................................................................................................UUGAGGUGUUUCUACAGGCUA.......  1263      4.79e+03
.........................................................................................................................UUGAGGUGUUUCUACAGGCU........  170       639
.........................................................................................................................UUGAGGUGUUUCUACAG...........  14        66.3
.........................................................................................................................UUGAGGUGUUUCUACAGGC.........  12        42.5
.........................................................................................................................UUGAGGUGUUUCUACAGG..........  6         20.1
.........................................................................................................................UUGAGGUGUUUCUACAGGCUAC......  4         13.7
.........................................................................................................................UUGAGGUGUUUCUACAGGCUACAU....  1         3.23
..........................................................................................................................UGAGGUGUUUCUACAGGCUA.......  95        339
..........................................................................................................................UGAGGUGUUUCUACAGGCU........  28        104
..........................................................................................................................UGAGGUGUUUCUACAGGCUAC......  1         3.23
..........................................................................................................................UGAGGUGUUUCUACAGGC.........  1         3.23
............................................................................................................................AGGUGUUUCUACAGGCU........  4         26.5
............................................................................................................................AGGUGUUUCUACAGGCUA.......  1         3.98
UCAUAUCUGGACUGUAGAAACACCUGAAGUGACUGAAGUUAGUCCGGUUUAGGUAUGAGAAUGAUUGGAGCACCUCUCCAGAUGUUCCAGAUGUAAUGAAACCGGUGCAAGCUUCAAGCUCUUGAGGUGUUUCUACAGGCUACAUAUGA
((((((.(((.((((((((((((((.(((.(..(((((((.(((((((((.....((.(((((.((((((.....)))))).))))))).........))))))).)).)))))))..).))).)))))))))))))).))).)))))) (-65.84)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	73	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	1028	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	1618	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).