Deep sequencing reads for stem-loop sequence MI0005908

Stem-loop ID

ppt-MIR166e

Reads

                                                                                                 ppt-miR166e                                       Count     RPM (mean number of reads per million)
.................................GGAAUGCCGCAUGGACCGAAG............................................................................................  46        180
.................................GGAAUGCCGCAUGGACCGAA.............................................................................................  5         19.2
.................................GGAAUGCCGCAUGGACCGAAGC...........................................................................................  3         11.2
.............................................................................................UUUCGGACCAGGCUUCAUUCC................................  1         16
..............................................................................................UUCGGACCAGGCUUCAUUCCCC..............................  1         3.23
...............................................................................................UCGGACCAGGCUUCAUUCCCC..............................  110       387
...............................................................................................UCGGACCAGGCUUCAUUCCC...............................  23        82.6
...............................................................................................UCGGACCAGGCUUCAUUCC................................  10        48.9
...............................................................................................UCGGACCAGGCUUCAUUC.................................  3         11.9
...............................................................................................UCGGACCAGGCUUCAUUCCCCU.............................  2         6.46
................................................................................................CGGACCAGGCUUCAUUCCCC..............................  2         7.97
................................................................................................CGGACCAGGCUUCAUUCCC...............................  1         3.23
................................................................................................CGGACCAGGCUUCAUUCCCCU.............................  1         3.98
AAUGUGCUUUUGGAGUUGUGAACCUUGCUGUGAGGAAUGCCGCAUGGACCGAAGCUAUGUGCUCCAUCUUAACGUGGUGGUAUUGAUACUACGUUUCGGACCAGGCUUCAUUCCCCUCAGCGCAGUUUCAUCAUGGUGAUGGACGG
..(((.((.(((..((.(((((.(((((((.(.((((((..((.(((.(((((((...((((.(((((.......)))))....).)))...))))))).))).))..)))))).).))))).)).))))).))..))).))))). (-47.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	6	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	116	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	204	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).