miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0005843
Stem-loop ID	dme-mir-927
Reads	dme-miR-927-5p dme-miR-927-3p Count RPM (mean number of reads per million) .............GUUUUAGAAUUCCUACGCUUU.......................................................... 1 0.0257 ..............UUUUAGAAUUCCUACGCUUUACC....................................................... 31 10.1 ..............UUUUAGAAUUCCUACGCUUUAC........................................................ 3 0.835 ..............UUUUAGAAUUCCUACGCUUUACCG...................................................... 1 0.278 ...............UUUAGAAUUCCUACGCUUUACC....................................................... 10489 436 ...............UUUAGAAUUCCUACGCUUUAC........................................................ 554 21.4 ...............UUUAGAAUUCCUACGCUUUACCG...................................................... 456 26.4 ...............UUUAGAAUUCCUACGCUUUA......................................................... 49 1.74 ...............UUUAGAAUUCCUACGCUUU.......................................................... 10 0.297 ...............UUUAGAAUUCCUACGCUUUACCGU..................................................... 3 0.0288 ...............UUUAGAAUUCCUACGCUU........................................................... 2 0.0353 ................UUAGAAUUCCUACGCUUUACC....................................................... 24 3.72 ................UUAGAAUUCCUACGCUUUACCG...................................................... 5 0.277 ................UUAGAAUUCCUACGCUUUAC........................................................ 2 1.98 ................UUAGAAUUCCUACGCUUUA......................................................... 1 0.0257 .................UAGAAUUCCUACGCUUUACC....................................................... 10 0.0959 ..................AGAAUUCCUACGCUUUACC....................................................... 1 0.00959 ...................GAAUUCCUACGCUUUACC....................................................... 2 0.138 .....................................GUGGCAUACGAAAUUCGG..................................... 48 2.52 ......................................................GCAAAGCGUUUGGAUUCUGAAAC............... 4 0.279 ......................................................GCAAAGCGUUUGGAUUCUGA.................. 4 0.157 ......................................................GCAAAGCGUUUGGAUUCUGAAA................ 3 0.941 ......................................................GCAAAGCGUUUGGAUUCUGAA................. 2 0.113 ......................................................GCAAAGCGUUUGGAUUCUG................... 1 0.0131 .......................................................CAAAGCGUUUGGAUUCUGAAAC............... 379 25.8 .......................................................CAAAGCGUUUGGAUUCUGAAA................ 75 2.08 .......................................................CAAAGCGUUUGGAUUCUGAA................. 9 0.514 .......................................................CAAAGCGUUUGGAUUCUGA.................. 2 0.0514 .......................................................CAAAGCGUUUGGAUUCUGAAACC.............. 1 0.0257 UGGUUGCUGUAGAGUUUUAGAAUUCCUACGCUUUACCGUGGCAUACGAAAUUCGGCAAAGCGUUUGGAUUCUGAAACCCUACCGAUCCAUUA (((...(.((((.((((((((((((..(((((((.(((..............))).)))))))..)))))))))))).)))).)..)))... (-35.44)

               dme-miR-927-5p                          dme-miR-927-3p                          Count     RPM (mean number of reads per million)
.............GUUUUAGAAUUCCUACGCUUU..........................................................  1         0.0257
..............UUUUAGAAUUCCUACGCUUUACC.......................................................  31        10.1
..............UUUUAGAAUUCCUACGCUUUAC........................................................  3         0.835
..............UUUUAGAAUUCCUACGCUUUACCG......................................................  1         0.278
...............UUUAGAAUUCCUACGCUUUACC.......................................................  10489     436
...............UUUAGAAUUCCUACGCUUUAC........................................................  554       21.4
...............UUUAGAAUUCCUACGCUUUACCG......................................................  456       26.4
...............UUUAGAAUUCCUACGCUUUA.........................................................  49        1.74
...............UUUAGAAUUCCUACGCUUU..........................................................  10        0.297
...............UUUAGAAUUCCUACGCUUUACCGU.....................................................  3         0.0288
...............UUUAGAAUUCCUACGCUU...........................................................  2         0.0353
................UUAGAAUUCCUACGCUUUACC.......................................................  24        3.72
................UUAGAAUUCCUACGCUUUACCG......................................................  5         0.277
................UUAGAAUUCCUACGCUUUAC........................................................  2         1.98
................UUAGAAUUCCUACGCUUUA.........................................................  1         0.0257
.................UAGAAUUCCUACGCUUUACC.......................................................  10        0.0959
..................AGAAUUCCUACGCUUUACC.......................................................  1         0.00959
...................GAAUUCCUACGCUUUACC.......................................................  2         0.138
.....................................GUGGCAUACGAAAUUCGG.....................................  48        2.52
......................................................GCAAAGCGUUUGGAUUCUGAAAC...............  4         0.279
......................................................GCAAAGCGUUUGGAUUCUGA..................  4         0.157
......................................................GCAAAGCGUUUGGAUUCUGAAA................  3         0.941
......................................................GCAAAGCGUUUGGAUUCUGAA.................  2         0.113
......................................................GCAAAGCGUUUGGAUUCUG...................  1         0.0131
.......................................................CAAAGCGUUUGGAUUCUGAAAC...............  379       25.8
.......................................................CAAAGCGUUUGGAUUCUGAAA................  75        2.08
.......................................................CAAAGCGUUUGGAUUCUGAA.................  9         0.514
.......................................................CAAAGCGUUUGGAUUCUGA..................  2         0.0514
.......................................................CAAAGCGUUUGGAUUCUGAAACC..............  1         0.0257
UGGUUGCUGUAGAGUUUUAGAAUUCCUACGCUUUACCGUGGCAUACGAAAUUCGGCAAAGCGUUUGGAUUCUGAAACCCUACCGAUCCAUUA
(((...(.((((.((((((((((((..(((((((.(((..............))).)))))))..)))))))))))).)))).)..)))... (-35.44)

miRBase

Deep sequencing reads for stem-loop sequence MI0005843

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).