miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0005808
Stem-loop ID	dme-mir-190
Reads	dme-miR-190-5p dme-miR-190-3p Count RPM (mean number of reads per million) CGAACUAAUUGAUGGUUCCAGUG............................................................................. 3 0.0213 ....CUAAUUGAUGGUUCCAGUG............................................................................. 20 2.5 ......................GAGAUAUGUUUGAUAUUCUUGGU....................................................... 21 0.219 ......................GAGAUAUGUUUGAUAUUCUUGGUU...................................................... 6 0.151 ......................GAGAUAUGUUUGAUAUUCUUGG........................................................ 6 0.0713 ......................GAGAUAUGUUUGAUAUUCUUGGUUG..................................................... 3 0.0347 ......................GAGAUAUGUUUGAUAUUCUUG......................................................... 3 0.0347 .......................AGAUAUGUUUGAUAUUCUUGGUUG..................................................... 14594 646 .......................AGAUAUGUUUGAUAUUCUUGG........................................................ 1988 77.1 .......................AGAUAUGUUUGAUAUUCUUGGUU...................................................... 1720 60 .......................AGAUAUGUUUGAUAUUCUUGGU....................................................... 1454 40.6 .......................AGAUAUGUUUGAUAUUCUUG......................................................... 1328 32.1 .......................AGAUAUGUUUGAUAUUCUUGGUUGU.................................................... 995 48.1 .......................AGAUAUGUUUGAUAUUCUU.......................................................... 395 8.98 .......................AGAUAUGUUUGAUAUUCU........................................................... 62 0.994 .......................AGAUAUGUUUGAUAUUC............................................................ 38 0.448 .......................AGAUAUGUUUGAUAUUCUUGGUUGUU................................................... 29 0.715 ........................GAUAUGUUUGAUAUUCUUGGUUG..................................................... 93 5.77 ........................GAUAUGUUUGAUAUUCUUGG........................................................ 25 0.52 ........................GAUAUGUUUGAUAUUCUUG......................................................... 22 0.713 ........................GAUAUGUUUGAUAUUCUUGGU....................................................... 16 1.12 ........................GAUAUGUUUGAUAUUCUUGGUU...................................................... 15 0.411 ........................GAUAUGUUUGAUAUUCUUGGUUGU.................................................... 12 0.408 ........................GAUAUGUUUGAUAUUCUU.......................................................... 7 0.123 ........................GAUAUGUUUGAUAUUCUUGGUUGUUU.................................................. 1 0.0235 ........................GAUAUGUUUGAUAUUCU........................................................... 1 0.00666 .........................AUAUGUUUGAUAUUCUUGGUUG..................................................... 28 2.52 .........................AUAUGUUUGAUAUUCUUG......................................................... 7 0.0497 .........................AUAUGUUUGAUAUUCUUGGUU...................................................... 2 2.18 .........................AUAUGUUUGAUAUUCUUGGU....................................................... 1 0.00666 ..........................UAUGUUUGAUAUUCUUGGUUG..................................................... 9 1.18 ..........................UAUGUUUGAUAUUCUUGGUU...................................................... 4 0.212 ..........................UAUGUUUGAUAUUCUUGGU....................................................... 2 0.145 ..........................UAUGUUUGAUAUUCUUGGUUGU.................................................... 1 0.0071 ...........................AUGUUUGAUAUUCUUGGUUG..................................................... 17 1.21 ...........................AUGUUUGAUAUUCUUGGU....................................................... 4 0.0925 ...........................AUGUUUGAUAUUCUUGGUUGU.................................................... 2 0.0159 ...........................AUGUUUGAUAUUCUUGG........................................................ 1 0.0235 ...........................AUGUUUGAUAUUCUUGGUU...................................................... 1 0.0499 ............................UGUUUGAUAUUCUUGGUUG..................................................... 15 2.15 ............................UGUUUGAUAUUCUUGGUU...................................................... 3 0.155 ............................UGUUUGAUAUUCUUGGUUGU.................................................... 1 0.0798 .............................GUUUGAUAUUCUUGGUUG..................................................... 23 1.75 ..............................UUUGAUAUUCUUGGUUG..................................................... 12 0.192 ...............................UUGAUAUUCUUGGUUGU.................................................... 3 0.0347 .............................................UGUUUCAUUCAAAAGUUCAC................................... 1 0.00666 ...............................................UUUCAUUCAAAAGUUCACCCAGGA............................. 3 0.0347 ...............................................UUUCAUUCAAAAGUUCAC................................... 3 0.0347 ...............................................UUUCAUUCAAAAGUUCA.................................... 3 0.0394 .............................................................UCACCCAGGAAUCAAACAUAUU................. 1 0.0371 ...............................................................ACCCAGGAAUCAAACAUAUUAUU.............. 7 0.16 ...............................................................ACCCAGGAAUCAAACAUAUUAUUA............. 5 0.355 ...............................................................ACCCAGGAAUCAAACAUAUUA................ 2 0.726 ...............................................................ACCCAGGAAUCAAACAUAUUAU............... 1 0.00666 ................................................................CCCAGGAAUCAAACAUAUUAUU.............. 1502 32.3 ................................................................CCCAGGAAUCAAACAUAUUAUUA............. 617 37.7 ................................................................CCCAGGAAUCAAACAUAUUAU............... 591 11.1 ................................................................CCCAGGAAUCAAACAUAUUA................ 51 1.48 ................................................................CCCAGGAAUCAAACAUAUU................. 31 0.502 ................................................................CCCAGGAAUCAAACAUAU.................. 13 1.02 ................................................................CCCAGGAAUCAAACAUA................... 6 0.0716 .................................................................CCAGGAAUCAAACAUAUUAUU.............. 24 0.246 .................................................................CCAGGAAUCAAACAUAUUAU............... 20 0.234 .................................................................CCAGGAAUCAAACAUAUUAUUA............. 7 0.154 .................................................................CCAGGAAUCAAACAUAUUA................ 4 0.0391 ..................................................................CAGGAAUCAAACAUAUUAUUA............. 8 0.0854 ..................................................................CAGGAAUCAAACAUAUUAUU.............. 6 0.0742 ...................................................................AGGAAUCAAACAUAUUAUU.............. 1 0.0235 CGAACUAAUUGAUGGUUCCAGUGAGAUAUGUUUGAUAUUCUUGGUUGUUUCAUUCAAAAGUUCACCCAGGAAUCAAACAUAUUAUUACUGUGACCCUCGC ..........((.(((..((((((((((((((((((..((((((.((...(........)..)).)))))))))))))))))).))))))..))).)).. (-34.10)

                        dme-miR-190-5p                          dme-miR-190-3p                         Count     RPM (mean number of reads per million)
CGAACUAAUUGAUGGUUCCAGUG.............................................................................  3         0.0213
....CUAAUUGAUGGUUCCAGUG.............................................................................  20        2.5
......................GAGAUAUGUUUGAUAUUCUUGGU.......................................................  21        0.219
......................GAGAUAUGUUUGAUAUUCUUGGUU......................................................  6         0.151
......................GAGAUAUGUUUGAUAUUCUUGG........................................................  6         0.0713
......................GAGAUAUGUUUGAUAUUCUUGGUUG.....................................................  3         0.0347
......................GAGAUAUGUUUGAUAUUCUUG.........................................................  3         0.0347
.......................AGAUAUGUUUGAUAUUCUUGGUUG.....................................................  14594     646
.......................AGAUAUGUUUGAUAUUCUUGG........................................................  1988      77.1
.......................AGAUAUGUUUGAUAUUCUUGGUU......................................................  1720      60
.......................AGAUAUGUUUGAUAUUCUUGGU.......................................................  1454      40.6
.......................AGAUAUGUUUGAUAUUCUUG.........................................................  1328      32.1
.......................AGAUAUGUUUGAUAUUCUUGGUUGU....................................................  995       48.1
.......................AGAUAUGUUUGAUAUUCUU..........................................................  395       8.98
.......................AGAUAUGUUUGAUAUUCU...........................................................  62        0.994
.......................AGAUAUGUUUGAUAUUC............................................................  38        0.448
.......................AGAUAUGUUUGAUAUUCUUGGUUGUU...................................................  29        0.715
........................GAUAUGUUUGAUAUUCUUGGUUG.....................................................  93        5.77
........................GAUAUGUUUGAUAUUCUUGG........................................................  25        0.52
........................GAUAUGUUUGAUAUUCUUG.........................................................  22        0.713
........................GAUAUGUUUGAUAUUCUUGGU.......................................................  16        1.12
........................GAUAUGUUUGAUAUUCUUGGUU......................................................  15        0.411
........................GAUAUGUUUGAUAUUCUUGGUUGU....................................................  12        0.408
........................GAUAUGUUUGAUAUUCUU..........................................................  7         0.123
........................GAUAUGUUUGAUAUUCUUGGUUGUUU..................................................  1         0.0235
........................GAUAUGUUUGAUAUUCU...........................................................  1         0.00666
.........................AUAUGUUUGAUAUUCUUGGUUG.....................................................  28        2.52
.........................AUAUGUUUGAUAUUCUUG.........................................................  7         0.0497
.........................AUAUGUUUGAUAUUCUUGGUU......................................................  2         2.18
.........................AUAUGUUUGAUAUUCUUGGU.......................................................  1         0.00666
..........................UAUGUUUGAUAUUCUUGGUUG.....................................................  9         1.18
..........................UAUGUUUGAUAUUCUUGGUU......................................................  4         0.212
..........................UAUGUUUGAUAUUCUUGGU.......................................................  2         0.145
..........................UAUGUUUGAUAUUCUUGGUUGU....................................................  1         0.0071
...........................AUGUUUGAUAUUCUUGGUUG.....................................................  17        1.21
...........................AUGUUUGAUAUUCUUGGU.......................................................  4         0.0925
...........................AUGUUUGAUAUUCUUGGUUGU....................................................  2         0.0159
...........................AUGUUUGAUAUUCUUGG........................................................  1         0.0235
...........................AUGUUUGAUAUUCUUGGUU......................................................  1         0.0499
............................UGUUUGAUAUUCUUGGUUG.....................................................  15        2.15
............................UGUUUGAUAUUCUUGGUU......................................................  3         0.155
............................UGUUUGAUAUUCUUGGUUGU....................................................  1         0.0798
.............................GUUUGAUAUUCUUGGUUG.....................................................  23        1.75
..............................UUUGAUAUUCUUGGUUG.....................................................  12        0.192
...............................UUGAUAUUCUUGGUUGU....................................................  3         0.0347
.............................................UGUUUCAUUCAAAAGUUCAC...................................  1         0.00666
...............................................UUUCAUUCAAAAGUUCACCCAGGA.............................  3         0.0347
...............................................UUUCAUUCAAAAGUUCAC...................................  3         0.0347
...............................................UUUCAUUCAAAAGUUCA....................................  3         0.0394
.............................................................UCACCCAGGAAUCAAACAUAUU.................  1         0.0371
...............................................................ACCCAGGAAUCAAACAUAUUAUU..............  7         0.16
...............................................................ACCCAGGAAUCAAACAUAUUAUUA.............  5         0.355
...............................................................ACCCAGGAAUCAAACAUAUUA................  2         0.726
...............................................................ACCCAGGAAUCAAACAUAUUAU...............  1         0.00666
................................................................CCCAGGAAUCAAACAUAUUAUU..............  1502      32.3
................................................................CCCAGGAAUCAAACAUAUUAUUA.............  617       37.7
................................................................CCCAGGAAUCAAACAUAUUAU...............  591       11.1
................................................................CCCAGGAAUCAAACAUAUUA................  51        1.48
................................................................CCCAGGAAUCAAACAUAUU.................  31        0.502
................................................................CCCAGGAAUCAAACAUAU..................  13        1.02
................................................................CCCAGGAAUCAAACAUA...................  6         0.0716
.................................................................CCAGGAAUCAAACAUAUUAUU..............  24        0.246
.................................................................CCAGGAAUCAAACAUAUUAU...............  20        0.234
.................................................................CCAGGAAUCAAACAUAUUAUUA.............  7         0.154
.................................................................CCAGGAAUCAAACAUAUUA................  4         0.0391
..................................................................CAGGAAUCAAACAUAUUAUUA.............  8         0.0854
..................................................................CAGGAAUCAAACAUAUUAUU..............  6         0.0742
...................................................................AGGAAUCAAACAUAUUAUU..............  1         0.0235
CGAACUAAUUGAUGGUUCCAGUGAGAUAUGUUUGAUAUUCUUGGUUGUUUCAUUCAAAAGUUCACCCAGGAAUCAAACAUAUUAUUACUGUGACCCUCGC
..........((.(((..((((((((((((((((((..((((((.((...(........)..)).)))))))))))))))))).))))))..))).)).. (-34.10)

miRBase

Deep sequencing reads for stem-loop sequence MI0005808

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).