Deep sequencing reads for stem-loop sequence MI0005761

Stem-loop ID hsa-mir-939
Reads 
               hsa-miR-939-5p                   hsa-miR-939-3p                      Count     RPM (mean number of reads per million)
.................................................CCCUGGGCCUCUGCUCCCCAGU...........  2         0.11
UGUGGGCAGGGCCCUGGGGAGCUGAGGCUCUGGGGGUGGCCGGGGCUGACCCUGGGCCUCUGCUCCCCAGUGUCUGACCGCG
.((((...((((.(((((((((.(((((.(..(((..(((....)))..)))..)))))).))))))))).))))..)))). (-59.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000108 2melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000140 1squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000150 1squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000157 5 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000164 2squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000168 1adenosquamous cell GEO : GSM532904 [ Witten D et al.]
ER0000000171 1 GEO : GSM532907 normal cervix [ Witten D et al.]
ER0000000174 4squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000180 1squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000183 1whole body GEO : GSM532919 normal cervix [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).