miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0005734
Stem-loop ID	ame-mir-279a
Reads	ame-miR-279a Count RPM (mean number of reads per million) ...AAAUGAAAAAAUUUCCUGA.............................................................................. 1 0.907 .....AUGAAAAAAUUUCCUGAAU............................................................................ 1 0.907 ..............................AAUGAGUGAAGGUCUAGUGCAC................................................ 182 165 ..............................AAUGAGUGAAGGUCUAGUGCACA............................................... 116 105 ..............................AAUGAGUGAAGGUCUAGUGCA................................................. 81 73.4 ..............................AAUGAGUGAAGGUCUAGUG................................................... 28 25.4 ..............................AAUGAGUGAAGGUCUAGUGCACAG.............................................. 15 13.6 ..............................AAUGAGUGAAGGUCUAGUGCACAGA............................................. 5 4.53 ..............................AAUGAGUGAAGGUCUAGUGC.................................................. 2 1.81 ...........................................................GAAAUUGUGACUAGAUCCACA.................... 1 0.907 ..............................................................AUUGUGACUAGAUCCACACUCAUU.............. 1 0.907 .................................................................GUGACUAGAUCCACACUCAUU.............. 4 3.63 .................................................................GUGACUAGAUCCACACUCA................ 1 0.907 .................................................................GUGACUAGAUCCACACUCAUUA............. 1 0.907 ..................................................................UGACUAGAUCCACACUCAUUA............. 21334 1.93e+04 ..................................................................UGACUAGAUCCACACUCAUU.............. 10086 9.14e+03 ..................................................................UGACUAGAUCCACACUCAUUAA............ 8947 8.11e+03 ..................................................................UGACUAGAUCCACACUCAU............... 328 297 ..................................................................UGACUAGAUCCACACUCAUUAAGU.......... 164 149 ..................................................................UGACUAGAUCCACACUCAUUAAG........... 149 135 ..................................................................UGACUAGAUCCACACUCAUUAAGUA......... 16 14.5 ..................................................................UGACUAGAUCCACACUCAUUAAGUAC........ 6 5.44 ..................................................................UGACUAGAUCCACACUCAUUAAGUACG....... 1 0.907 ...................................................................GACUAGAUCCACACUCAUUA............. 140 127 ...................................................................GACUAGAUCCACACUCAUU.............. 66 59.8 ...................................................................GACUAGAUCCACACUCAUUAA............ 36 32.6 ...................................................................GACUAGAUCCACACUCAUUAAGU.......... 7 6.35 ...................................................................GACUAGAUCCACACUCAUUAAG........... 3 2.72 ...................................................................GACUAGAUCCACACUCAUUAAGUA......... 2 1.81 ....................................................................ACUAGAUCCACACUCAUUA............. 2 1.81 ....................................................................ACUAGAUCCACACUCAUUAA............ 2 1.81 AGAAAAUGAAAAAAUUUCCUGAAUUUGCCAAAUGAGUGAAGGUCUAGUGCACAGAAAAUGAAAUUGUGACUAGAUCCACACUCAUUAAGUACGUUCAGGU .................(((((((.(((..((((((((..((((((((.(((((.........)))))))))))))..))))))))..))).))))))). (-36.40)

                                                                    ame-miR-279a                      Count     RPM (mean number of reads per million)
...AAAUGAAAAAAUUUCCUGA..............................................................................  1         0.907
.....AUGAAAAAAUUUCCUGAAU............................................................................  1         0.907
..............................AAUGAGUGAAGGUCUAGUGCAC................................................  182       165
..............................AAUGAGUGAAGGUCUAGUGCACA...............................................  116       105
..............................AAUGAGUGAAGGUCUAGUGCA.................................................  81        73.4
..............................AAUGAGUGAAGGUCUAGUG...................................................  28        25.4
..............................AAUGAGUGAAGGUCUAGUGCACAG..............................................  15        13.6
..............................AAUGAGUGAAGGUCUAGUGCACAGA.............................................  5         4.53
..............................AAUGAGUGAAGGUCUAGUGC..................................................  2         1.81
...........................................................GAAAUUGUGACUAGAUCCACA....................  1         0.907
..............................................................AUUGUGACUAGAUCCACACUCAUU..............  1         0.907
.................................................................GUGACUAGAUCCACACUCAUU..............  4         3.63
.................................................................GUGACUAGAUCCACACUCA................  1         0.907
.................................................................GUGACUAGAUCCACACUCAUUA.............  1         0.907
..................................................................UGACUAGAUCCACACUCAUUA.............  21334     1.93e+04
..................................................................UGACUAGAUCCACACUCAUU..............  10086     9.14e+03
..................................................................UGACUAGAUCCACACUCAUUAA............  8947      8.11e+03
..................................................................UGACUAGAUCCACACUCAU...............  328       297
..................................................................UGACUAGAUCCACACUCAUUAAGU..........  164       149
..................................................................UGACUAGAUCCACACUCAUUAAG...........  149       135
..................................................................UGACUAGAUCCACACUCAUUAAGUA.........  16        14.5
..................................................................UGACUAGAUCCACACUCAUUAAGUAC........  6         5.44
..................................................................UGACUAGAUCCACACUCAUUAAGUACG.......  1         0.907
...................................................................GACUAGAUCCACACUCAUUA.............  140       127
...................................................................GACUAGAUCCACACUCAUU..............  66        59.8
...................................................................GACUAGAUCCACACUCAUUAA............  36        32.6
...................................................................GACUAGAUCCACACUCAUUAAGU..........  7         6.35
...................................................................GACUAGAUCCACACUCAUUAAG...........  3         2.72
...................................................................GACUAGAUCCACACUCAUUAAGUA.........  2         1.81
....................................................................ACUAGAUCCACACUCAUUA.............  2         1.81
....................................................................ACUAGAUCCACACUCAUUAA............  2         1.81
AGAAAAUGAAAAAAUUUCCUGAAUUUGCCAAAUGAGUGAAGGUCUAGUGCACAGAAAAUGAAAUUGUGACUAGAUCCACACUCAUUAAGUACGUUCAGGU
.................(((((((.(((..((((((((..((((((((.(((((.........)))))))))))))..))))))))..))).))))))). (-36.40)

miRBase

Deep sequencing reads for stem-loop sequence MI0005734

Filter reads

References

References
1	PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).