Deep sequencing reads for stem-loop sequence MI0005689

Stem-loop ID

ppt-MIR171b

Reads

                                                                    ppt-miR171b              Count     RPM (mean number of reads per million)
.......UGUUAUUGGGCCCGCUCAAUC................................................................  2         6.46
..................................................................UUGAGCCGCGCCAAUAUCACA.....  91        677
..................................................................UUGAGCCGCGCCAAUAUCAC......  1         3.23
...................................................................UGAGCCGCGCCAAUAUCACAU....  164       1.03e+03
...................................................................UGAGCCGCGCCAAUAUCACA.....  20        93.2
...................................................................UGAGCCGCGCCAAUAUCACAUC...  18        84.5
...................................................................UGAGCCGCGCCAAUAUCAC......  4         27.2
...................................................................UGAGCCGCGCCAAUAUC........  3         35.3
......................................................................GCCGCGCCAAUAUCACAU....  1         3.23
AGGCAUGUGUUAUUGGGCCCGCUCAAUCAGAUGUCUUUUCCAGCAACGGCUGGUAUUGUCCUCAGAUUGAGCCGCGCCAAUAUCACAUCCUU
(((.(((((.((((((((..((((((((.((.(.(....(((((....)))))....).).)).)))))))).)).)))))).)))))))). (-40.30)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	78	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	71	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	182	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).