Deep sequencing reads for stem-loop sequence MI0005514

Stem-loop ID mmu-mir-493
Reads 
        mmu-miR-493-5p                            mmu-miR-493-3p                     Count     RPM (mean number of reads per million)
.........CUUGUACAUGGUAGGCUUUCAU....................................................  2         0.00956
.........CUUGUACAUGGUAGGCUUUCAUU...................................................  1         0.00209
.........CUUGUACAUGGUAGGCUUUC......................................................  1         0.00738
..........UUGUACAUGGUAGGCUUUCAUU...................................................  692       14.4
..........UUGUACAUGGUAGGCUUUCAU....................................................  361       6.73
..........UUGUACAUGGUAGGCUUUCA.....................................................  34        0.459
..........UUGUACAUGGUAGGCUUUC......................................................  16        0.181
..........UUGUACAUGGUAGGCUUUCAUUC..................................................  10        0.0693
..........UUGUACAUGGUAGGCUUU.......................................................  5         0.0809
..........UUGUACAUGGUAGGCUU........................................................  2         0.0391
...........UGUACAUGGUAGGCUUUCAU....................................................  3         0.0131
...........UGUACAUGGUAGGCUUUCAUU...................................................  3         0.0377
...........UGUACAUGGUAGGCUUUCA.....................................................  1         0.00218
............GUACAUGGUAGGCUUUCAUU...................................................  36        0.494
............GUACAUGGUAGGCUUUCAU....................................................  15        0.118
............GUACAUGGUAGGCUUUCA.....................................................  1         0.00738
.............UACAUGGUAGGCUUUCAUUCA.................................................  5         0.064
.............UACAUGGUAGGCUUUCAUU...................................................  2         0.0297
.............UACAUGGUAGGCUUUCAUUC..................................................  2         0.00623
.............UACAUGGUAGGCUUUCAUUCAU................................................  1         0.00434
.............UACAUGGUAGGCUUUCAUUCAUU...............................................  1         0.00218
..............ACAUGGUAGGCUUUCAUU...................................................  3         0.042
..............ACAUGGUAGGCUUUCAU....................................................  2         0.0262
..............................................UCGGUGAAGGUCCUACUGUGUGC..............  16        0.391
..............................................UCGGUGAAGGUCCUACUGU..................  1         0.00514
..............................................UCGGUGAAGGUCCUACUGUGUG...............  1         0.0211
.................................................GUGAAGGUCCUACUGUGUGC..............  1         0.00514
..................................................UGAAGGUCCUACUGUGUGCCAGG..........  1212      32.5
..................................................UGAAGGUCCUACUGUGUGCCAG...........  178       4.92
..................................................UGAAGGUCCUACUGUGUGCCA............  141       3.22
..................................................UGAAGGUCCUACUGUGUGCC.............  32        0.674
..................................................UGAAGGUCCUACUGUGUGC..............  5         0.0472
..................................................UGAAGGUCCUACUGUGUGCCAGGC.........  4         0.0649
...................................................GAAGGUCCUACUGUGUGCCAGG..........  8         0.594
.....................................................AGGUCCUACUGUGUGCCAGG..........  3         0.061
.....................................................AGGUCCUACUGUGUGCCAG...........  3         0.0391
......................................................GGUCCUACUGUGUGCCAG...........  2         0.0103
......................................................GGUCCUACUGUGUGCCAGG..........  1         0.0207
.......................................................GUCCUACUGUGUGCCAG...........  1         0.00514
.......................................................GUCCUACUGUGUGCCAGG..........  1         0.00514
CGCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUUUUUGCACAUUCGGUGAAGGUCCUACUGUGUGCCAGGCCCUGUGCCA
.((((((((((.((((((((((((((((((((................)))))))).)))))))))))).)))))))).)).. (-45.09)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000036 6brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 13brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 31brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 5brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 87brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 10whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 61whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 76whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 13whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 190whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 222whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 278whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 295whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 293whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 286whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 274whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 788whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 12embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 83embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 82embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 16embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 6embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 8embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 9embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000062 3embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 3embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 2bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000224 1spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 7bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 18spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000243 1lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 17spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 36 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 124 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 20brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000255 43skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 65skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 1salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000259 1ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).