Deep sequencing reads for stem-loop sequence MI0005116

Stem-loop ID hsa-mir-765
Reads 
                                                                      hsa-miR-765                                  Count     RPM (mean number of reads per million)
................................................................UUUCUGGAGGAGAAGGAAGGUGAU..........................  2         83.8
................................................................UUUCUGGAGGAGAAGGAAGGUG............................  1         65.2
................................................................UUUCUGGAGGAGAAGGAAGGUGAUG.........................  1         18.6
................................................................UUUCUGGAGGAGAAGGAAGGUGA...........................  1         24.2
..................................................................UCUGGAGGAGAAGGAAGGUGAU..........................  6         0.615
...................................................................CUGGAGGAGAAGGAAGGUGAUG.........................  11        0.348
...................................................................CUGGAGGAGAAGGAAGGUGAU..........................  2         0.0761
....................................................................UGGAGGAGAAGGAAGGUGAUGA........................  20        0.857
....................................................................UGGAGGAGAAGGAAGGUGAUGAAG......................  3         0.0457
UUUAGGCGCUGAUGAAAGUGGAGUUCAGUAGACAGCCCUUUUCAAGCCCUACGAGAAACUGGGGUUUCUGGAGGAGAAGGAAGGUGAUGAAGGAUCUGUUCUCGUGAGCCUGAA
.((((((....((((.((..((.((((....((...(((((((((((((((........))))))))......)))))))...))..))))...))..)).))))..)))))). (-33.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000002 1embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 11melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000106 4melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000108 4melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 4melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 8melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 8melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 2melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000156 1squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000158 3squamous cell GEO : GSM532894 [ Witten D et al.]
ER0000000166 1squamous cell GEO : GSM532902 [ Witten D et al.]
ER0000000168 1adenosquamous cell GEO : GSM532904 [ Witten D et al.]
ER0000000174 1squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000176 4adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000178 1squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000182 4squamous cell GEO : GSM532918 [ Witten D et al.]
ER0000000184 4squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000186 1squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000189 3whole body GEO : GSM532925 normal cervix [ Witten D et al.]
ER0000000190 3squamous cell GEO : GSM532926 [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).