miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0005110
Stem-loop ID	ath-MIR780
Reads	ath-miR780.1 ath-miR780.2 Count RPM (mean number of reads per million) .....UAUCAGAUAUUUCACGAAGAUA................................................................................................................................................... 14 30 .....UAUCAGAUAUUUCACGAAGA..................................................................................................................................................... 1 0.144 .....UAUCAGAUAUUUCACGAAGAUAUC................................................................................................................................................. 1 9.42 .....UAUCAGAUAUUUCACGAAGAU.................................................................................................................................................... 1 0.144 ......AUCAGAUAUUUCACGAAGAUAUC................................................................................................................................................. 35 330 ......AUCAGAUAUUUCACGAAGAUAU.................................................................................................................................................. 7 106 ......AUCAGAUAUUUCACGAAGAUAUCU................................................................................................................................................ 6 56.5 ......AUCAGAUAUUUCACGAAGAUAUCUG............................................................................................................................................... 3 28.3 ......AUCAGAUAUUUCACGAAGAUA................................................................................................................................................... 2 18.8 ......AUCAGAUAUUUCACGAAGAU.................................................................................................................................................... 1 9.42 .......UCAGAUAUUUCACGAAGAUAUC................................................................................................................................................. 3 56.6 .........AGAUAUUUCACGAAGAUAUCUG............................................................................................................................................... 1 12.1 ..........GAUAUUUCACGAAGAUAUCU................................................................................................................................................ 1 9.42 ............UAUUUCACGAAGAUAUCUGCA............................................................................................................................................. 1 9.42 ...................CGAAGAUAUCUGCAUAACAGC...................................................................................................................................... 2 19.8 .....................AAGAUAUCUGCAUAACAGCUA.................................................................................................................................... 4 48.6 ......................AGAUAUCUGCAUAACAGCUACGAG................................................................................................................................ 1 9.42 .........................UAUCUGCAUAACAGCUACGAGG............................................................................................................................... 10 189 ...........................UCUGCAUAACAGCUACGAGGA.............................................................................................................................. 13 170 ...........................UCUGCAUAACAGCUACGAGG............................................................................................................................... 1 18.9 ...........................UCUGCAUAACAGCUACGAGGAA............................................................................................................................. 1 18.9 ............................CUGCAUAACAGCUACGAGGAA............................................................................................................................. 210 3.95e+03 ............................CUGCAUAACAGCUACGAGGA.............................................................................................................................. 64 1.21e+03 ............................CUGCAUAACAGCUACGAGGAAA............................................................................................................................ 29 529 ............................CUGCAUAACAGCUACGAGG............................................................................................................................... 2 37.7 ............................CUGCAUAACAGCUACGAGGAAAU........................................................................................................................... 2 37.7 .............................UGCAUAACAGCUACGAGGAAA............................................................................................................................ 15 209 .............................UGCAUAACAGCUACGAGGAA............................................................................................................................. 9 151 .............................UGCAUAACAGCUACGAGGA.............................................................................................................................. 4 66.5 .............................UGCAUAACAGCUACGAGGAAAU........................................................................................................................... 3 56.6 .............................UGCAUAACAGCUACGAGGAAAUUG......................................................................................................................... 2 19.8 ..............................GCAUAACAGCUACGAGGAA............................................................................................................................. 1 18.9 ...............................................................................................................................UUCUAGCAGCUGUUGAGCAGG.......................... 4 66 ................................................................................................................................UCUAGCAGCUGUUGAGCAGGU......................... 36 373 ................................................................................................................................UCUAGCAGCUGUUGAGCAGG.......................... 2 28.3 ................................................................................................................................UCUAGCAGCUGUUGAGCAGGUUUC...................... 1 18.9 .................................................................................................................................CUAGCAGCUGUUGAGCAGGU......................... 140 20.2 .................................................................................................................................CUAGCAGCUGUUGAGCAGG.......................... 60 8.67 .................................................................................................................................CUAGCAGCUGUUGAGCAGGUU........................ 2 37.7 ..................................................................................................................................UAGCAGCUGUUGAGCAGGUUUC...................... 1 18.9 ..................................................................................................................................UAGCAGCUGUUGAGCAGGU......................... 1 18.9 .....................................................................................................................................CAGCUGUUGAGCAGGUUUCUUC................... 1 18.9 ......................................................................................................................................AGCUGUUGAGCAGGUUUCUUC................... 1 12.1 .......................................................................................................................................GCUGUUGAGCAGGUUUCUUC................... 1 12.1 .........................................................................................................................................UGUUGAGCAGGUUUCUUCGUG................ 2 19 .............................................................................................................................................GAGCAGGUUUCUUCGUGAAUAUC.......... 3 28.3 .............................................................................................................................................GAGCAGGUUUCUUCGUGAAUA............ 1 9.42 ..............................................................................................................................................AGCAGGUUUCUUCGUGAAUAUCU......... 2 18.8 .................................................................................................................................................AGGUUUCUUCGUGAAUAUCUGGC...... 1 9.42 .................................................................................................................................................AGGUUUCUUCGUGAAUAUCU......... 1 9.42 ..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGGCA..... 13 123 ..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGG....... 8 132 ..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGGCAU.... 2 18.8 ..................................................................................................................................................GGUUUCUUCGUGAAUAUCUG........ 1 9.42 ..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGGC...... 1 9.42 ....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCAU.... 24 453 ....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCA..... 5 56.9 ....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCAUU... 3 56.6 ....................................................................................................................................................UUUCUUCGUGAAUAUCUGGC...... 1 18.9 ....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCAUUU.. 1 18.9 ....................................................................................................................................................UUUCUUCGUGAAUAUCUGG....... 1 18.9 .....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAU.... 68 1.26e+03 .....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAUU... 49 924 .....................................................................................................................................................UUCUUCGUGAAUAUCUGGCA..... 10 170 .....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAUUU.. 2 37.7 .....................................................................................................................................................UUCUUCGUGAAUAUCUGGC...... 1 18.9 .....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAUUUU. 1 18.9 ......................................................................................................................................................UCUUCGUGAAUAUCUGGCAU.... 13 245 ......................................................................................................................................................UCUUCGUGAAUAUCUGGCAUU... 6 85 ......................................................................................................................................................UCUUCGUGAAUAUCUGGCAUUU.. 1 18.9 .......................................................................................................................................................CUUCGUGAAUAUCUGGCAU.... 3 37.9 .......................................................................................................................................................CUUCGUGAAUAUCUGGCAUU... 1 18.9 .......................................................................................................................................................CUUCGUGAAUAUCUGGCAUUU.. 1 18.9 ........................................................................................................................................................UUCGUGAAUAUCUGGCAUU... 1 0.144 CAAGAUAUCAGAUAUUUCACGAAGAUAUCUGCAUAACAGCUACGAGGAAAUUGUGAUUUUAUCGUUUCACAAACAUCAACAGCUCCAUGGAUCGUUAUGGACGGAUAAAUCACAAUCACUAUCCUUUUUCUAGCAGCUGUUGAGCAGGUUUCUUCGUGAAUAUCUGGCAUUUUG ((((((..((((((((.((((((((.((((((.((((((((.((((((.((((((((((.((((((.....))).......(.(((((((....)))))))).))))))))))))).....)))))......).)))))))).)))))).))))))))))))))))..)))))) (-65.10)

                                                                                                                                 ath-miR780.1         ath-miR780.2              Count     RPM (mean number of reads per million)
.....UAUCAGAUAUUUCACGAAGAUA...................................................................................................................................................  14        30
.....UAUCAGAUAUUUCACGAAGA.....................................................................................................................................................  1         0.144
.....UAUCAGAUAUUUCACGAAGAUAUC.................................................................................................................................................  1         9.42
.....UAUCAGAUAUUUCACGAAGAU....................................................................................................................................................  1         0.144
......AUCAGAUAUUUCACGAAGAUAUC.................................................................................................................................................  35        330
......AUCAGAUAUUUCACGAAGAUAU..................................................................................................................................................  7         106
......AUCAGAUAUUUCACGAAGAUAUCU................................................................................................................................................  6         56.5
......AUCAGAUAUUUCACGAAGAUAUCUG...............................................................................................................................................  3         28.3
......AUCAGAUAUUUCACGAAGAUA...................................................................................................................................................  2         18.8
......AUCAGAUAUUUCACGAAGAU....................................................................................................................................................  1         9.42
.......UCAGAUAUUUCACGAAGAUAUC.................................................................................................................................................  3         56.6
.........AGAUAUUUCACGAAGAUAUCUG...............................................................................................................................................  1         12.1
..........GAUAUUUCACGAAGAUAUCU................................................................................................................................................  1         9.42
............UAUUUCACGAAGAUAUCUGCA.............................................................................................................................................  1         9.42
...................CGAAGAUAUCUGCAUAACAGC......................................................................................................................................  2         19.8
.....................AAGAUAUCUGCAUAACAGCUA....................................................................................................................................  4         48.6
......................AGAUAUCUGCAUAACAGCUACGAG................................................................................................................................  1         9.42
.........................UAUCUGCAUAACAGCUACGAGG...............................................................................................................................  10        189
...........................UCUGCAUAACAGCUACGAGGA..............................................................................................................................  13        170
...........................UCUGCAUAACAGCUACGAGG...............................................................................................................................  1         18.9
...........................UCUGCAUAACAGCUACGAGGAA.............................................................................................................................  1         18.9
............................CUGCAUAACAGCUACGAGGAA.............................................................................................................................  210       3.95e+03
............................CUGCAUAACAGCUACGAGGA..............................................................................................................................  64        1.21e+03
............................CUGCAUAACAGCUACGAGGAAA............................................................................................................................  29        529
............................CUGCAUAACAGCUACGAGG...............................................................................................................................  2         37.7
............................CUGCAUAACAGCUACGAGGAAAU...........................................................................................................................  2         37.7
.............................UGCAUAACAGCUACGAGGAAA............................................................................................................................  15        209
.............................UGCAUAACAGCUACGAGGAA.............................................................................................................................  9         151
.............................UGCAUAACAGCUACGAGGA..............................................................................................................................  4         66.5
.............................UGCAUAACAGCUACGAGGAAAU...........................................................................................................................  3         56.6
.............................UGCAUAACAGCUACGAGGAAAUUG.........................................................................................................................  2         19.8
..............................GCAUAACAGCUACGAGGAA.............................................................................................................................  1         18.9
...............................................................................................................................UUCUAGCAGCUGUUGAGCAGG..........................  4         66
................................................................................................................................UCUAGCAGCUGUUGAGCAGGU.........................  36        373
................................................................................................................................UCUAGCAGCUGUUGAGCAGG..........................  2         28.3
................................................................................................................................UCUAGCAGCUGUUGAGCAGGUUUC......................  1         18.9
.................................................................................................................................CUAGCAGCUGUUGAGCAGGU.........................  140       20.2
.................................................................................................................................CUAGCAGCUGUUGAGCAGG..........................  60        8.67
.................................................................................................................................CUAGCAGCUGUUGAGCAGGUU........................  2         37.7
..................................................................................................................................UAGCAGCUGUUGAGCAGGUUUC......................  1         18.9
..................................................................................................................................UAGCAGCUGUUGAGCAGGU.........................  1         18.9
.....................................................................................................................................CAGCUGUUGAGCAGGUUUCUUC...................  1         18.9
......................................................................................................................................AGCUGUUGAGCAGGUUUCUUC...................  1         12.1
.......................................................................................................................................GCUGUUGAGCAGGUUUCUUC...................  1         12.1
.........................................................................................................................................UGUUGAGCAGGUUUCUUCGUG................  2         19
.............................................................................................................................................GAGCAGGUUUCUUCGUGAAUAUC..........  3         28.3
.............................................................................................................................................GAGCAGGUUUCUUCGUGAAUA............  1         9.42
..............................................................................................................................................AGCAGGUUUCUUCGUGAAUAUCU.........  2         18.8
.................................................................................................................................................AGGUUUCUUCGUGAAUAUCUGGC......  1         9.42
.................................................................................................................................................AGGUUUCUUCGUGAAUAUCU.........  1         9.42
..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGGCA.....  13        123
..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGG.......  8         132
..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGGCAU....  2         18.8
..................................................................................................................................................GGUUUCUUCGUGAAUAUCUG........  1         9.42
..................................................................................................................................................GGUUUCUUCGUGAAUAUCUGGC......  1         9.42
....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCAU....  24        453
....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCA.....  5         56.9
....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCAUU...  3         56.6
....................................................................................................................................................UUUCUUCGUGAAUAUCUGGC......  1         18.9
....................................................................................................................................................UUUCUUCGUGAAUAUCUGGCAUUU..  1         18.9
....................................................................................................................................................UUUCUUCGUGAAUAUCUGG.......  1         18.9
.....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAU....  68        1.26e+03
.....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAUU...  49        924
.....................................................................................................................................................UUCUUCGUGAAUAUCUGGCA.....  10        170
.....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAUUU..  2         37.7
.....................................................................................................................................................UUCUUCGUGAAUAUCUGGC......  1         18.9
.....................................................................................................................................................UUCUUCGUGAAUAUCUGGCAUUUU.  1         18.9
......................................................................................................................................................UCUUCGUGAAUAUCUGGCAU....  13        245
......................................................................................................................................................UCUUCGUGAAUAUCUGGCAUU...  6         85
......................................................................................................................................................UCUUCGUGAAUAUCUGGCAUUU..  1         18.9
.......................................................................................................................................................CUUCGUGAAUAUCUGGCAU....  3         37.9
.......................................................................................................................................................CUUCGUGAAUAUCUGGCAUU...  1         18.9
.......................................................................................................................................................CUUCGUGAAUAUCUGGCAUUU..  1         18.9
........................................................................................................................................................UUCGUGAAUAUCUGGCAUU...  1         0.144
CAAGAUAUCAGAUAUUUCACGAAGAUAUCUGCAUAACAGCUACGAGGAAAUUGUGAUUUUAUCGUUUCACAAACAUCAACAGCUCCAUGGAUCGUUAUGGACGGAUAAAUCACAAUCACUAUCCUUUUUCUAGCAGCUGUUGAGCAGGUUUCUUCGUGAAUAUCUGGCAUUUUG
((((((..((((((((.((((((((.((((((.((((((((.((((((.((((((((((.((((((.....))).......(.(((((((....)))))))).))))))))))))).....)))))......).)))))))).)))))).))))))))))))))))..)))))) (-65.10)

miRBase

Deep sequencing reads for stem-loop sequence MI0005110

Filter reads

References

References
1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2	PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).