Deep sequencing reads for stem-loop sequence MI0005087

Stem-loop ID osa-MIR395p
Reads 
                                                 osa-miR395p         Count     RPM (mean number of reads per million)
..GUUCCCUUCAAGCACUUCACG.............................................  21        4.95
................................................UGAAGUGUUUGGGGGAACUC  42        36.3
................................................UGAAGUGUUUGGGGGAAC..  36        8.57
GAGUUCCCUUCAAGCACUUCACGUGGCACUAUUUCAAUGCGUACCGUGUGAAGUGUUUGGGGGAACUC
(((((((((.((((((((((((((((.(((((....))).)).))))))))))))))))))))))))) (-37.50)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000008 1whole body GEO : GSM407071 [ Johnson C et al.]
ER0000000009 1whole body GEO : GSM407072 [ Johnson C et al.]
ER0000000201 101whole body GEO : GSM571077 strain: indica 93-11, age: 12-day-old, stress: control [ Li T et al.]
ER0000000202 101whole body GEO : GSM571078 strain: indica 93-11, stress: H2O2 [ Li T et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2
PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).