Deep sequencing reads for stem-loop sequence MI0004665

Stem-loop ID mmu-mir-146b
Reads 
                           mmu-miR-146b-5p                       mmu-miR-146b-3p                                Count     RPM (mean number of reads per million)
...UGAGAGAACUUUGGCCACCUGGCUCU................................................................................  1         0.00288
....GAGAGAACUUUGGCCACCUGGCUC.................................................................................  2         0.00425
..........................UCUGAGAACUGAAUUCCAUAGGCUGU.........................................................  29        0.393
..........................UCUGAGAACUGAAUUCCAUAGGCU...........................................................  26        0.0571
..........................UCUGAGAACUGAAUUCCAUAGGCUG..........................................................  17        0.0697
..........................UCUGAGAACUGAAUUCCAU................................................................  14        0.0341
..........................UCUGAGAACUGAAUUCCAUAGGC............................................................  9         0.023
..........................UCUGAGAACUGAAUUCCAUAG..............................................................  4         0.00912
..........................UCUGAGAACUGAAUUCCAUAGG.............................................................  4         0.0199
..........................UCUGAGAACUGAAUUCCAUA...............................................................  2         0.00764
...........................CUGAGAACUGAAUUCCAUAGGCU...........................................................  968       2.22
...........................CUGAGAACUGAAUUCCAUAGGCUG..........................................................  822       2.32
...........................CUGAGAACUGAAUUCCAUAGGCUGU.........................................................  301       1.1
...........................CUGAGAACUGAAUUCCAUAGGC............................................................  86        0.206
...........................CUGAGAACUGAAUUCCAUA...............................................................  57        0.199
...........................CUGAGAACUGAAUUCCAUAG..............................................................  52        0.195
...........................CUGAGAACUGAAUUCCAUAGG.............................................................  33        0.0911
...........................CUGAGAACUGAAUUCCAUAGGCUGUG........................................................  26        0.0723
............................UGAGAACUGAAUUCCAUAGGCUG..........................................................  519146    1.68e+03
............................UGAGAACUGAAUUCCAUAGGCUGU.........................................................  215790    868
............................UGAGAACUGAAUUCCAUAGGCU...........................................................  148666    435
............................UGAGAACUGAAUUCCAUAG..............................................................  26090     93.5
............................UGAGAACUGAAUUCCAUAGGC............................................................  21554     64.9
............................UGAGAACUGAAUUCCAUAGGCUGUG........................................................  6541      22.1
............................UGAGAACUGAAUUCCAUAGG.............................................................  4673      16.6
............................UGAGAACUGAAUUCCAUAGGCUGUGA.......................................................  198       0.778
............................UGAGAACUGAAUUCCAU................................................................  52        0.165
............................UGAGAACUGAAUUCCAUAGGCUGUGAG......................................................  30        0.109
............................UGAGAACUGAAUUCCAUA...............................................................  19        0.184
............................UGAGAACUGAAUUCCAUAGGCUGUGAGCU....................................................  2         0.00835
............................UGAGAACUGAAUUCCAUAGGCUGUGAGC.....................................................  2         0.0063
.............................GAGAACUGAAUUCCAUAGGCUG..........................................................  1921      5.13
.............................GAGAACUGAAUUCCAUAGGCUGU.........................................................  967       6.2
.............................GAGAACUGAAUUCCAUAGGCU...........................................................  817       2.15
.............................GAGAACUGAAUUCCAUAGGC............................................................  83        0.245
.............................GAGAACUGAAUUCCAUAGG.............................................................  22        0.124
.............................GAGAACUGAAUUCCAUAGGCUGUG........................................................  7         0.0191
..............................AGAACUGAAUUCCAUAGGCU...........................................................  46        0.156
..............................AGAACUGAAUUCCAUAGGCUG..........................................................  38        0.127
..............................AGAACUGAAUUCCAUAGGCUGU.........................................................  20        0.232
..............................AGAACUGAAUUCCAUAGGC............................................................  1         0.00213
..............................AGAACUGAAUUCCAUAGGCUGUG........................................................  1         0.00274
...............................GAACUGAAUUCCAUAGGCUGU.........................................................  27        0.338
...............................GAACUGAAUUCCAUAGGCU...........................................................  8         0.0481
...............................GAACUGAAUUCCAUAGGCUG..........................................................  2         0.0444
...............................GAACUGAAUUCCAUAGGCUGUG........................................................  1         0.00347
................................AACUGAAUUCCAUAGGCUGU.........................................................  40        0.493
................................AACUGAAUUCCAUAGGCUGUGAG......................................................  16        0.0352
................................AACUGAAUUCCAUAGGCUG..........................................................  15        0.0986
................................AACUGAAUUCCAUAGGCU...........................................................  3         0.0608
................................AACUGAAUUCCAUAGGCUGUG........................................................  2         0.00425
................................AACUGAAUUCCAUAGGCUGUGA.......................................................  1         0.00471
.................................ACUGAAUUCCAUAGGCUGU.........................................................  436       7.58
.................................ACUGAAUUCCAUAGGCU...........................................................  31        0.331
.................................ACUGAAUUCCAUAGGCUG..........................................................  10        0.27
.................................ACUGAAUUCCAUAGGCUGUGAG......................................................  6         0.014
..................................CUGAAUUCCAUAGGCUGU.........................................................  57        0.884
..................................CUGAAUUCCAUAGGCUG..........................................................  3         0.0344
..................................CUGAAUUCCAUAGGCUGUG........................................................  2         0.0063
..................................CUGAAUUCCAUAGGCUGUGAG......................................................  2         0.00611
...................................UGAAUUCCAUAGGCUGU.........................................................  35        0.42
...................................UGAAUUCCAUAGGCUGUGAG......................................................  1         0.00274
...............................................................GACGCCCUAGGGACUCAGUUCUGGU.....................  1         0.0026
.................................................................CGCCCUAGGGACUCAGUUCUGGU.....................  1         0.00398
.................................................................CGCCCUAGGGACUCAGUUCUGG......................  1         0.0105
..................................................................GCCCUAGGGACUCAGUUCUGGU.....................  480       2.84
..................................................................GCCCUAGGGACUCAGUUCU........................  52        0.187
..................................................................GCCCUAGGGACUCAGUUC.........................  37        0.105
..................................................................GCCCUAGGGACUCAGUUCUGG......................  23        0.186
..................................................................GCCCUAGGGACUCAGUUCUG.......................  8         0.0299
..................................................................GCCCUAGGGACUCAGUUCUGGUG....................  5         0.0127
...................................................................CCCUAGGGACUCAGUUCUGGU.....................  149       0.455
...................................................................CCCUAGGGACUCAGUUC.........................  14        0.0638
...................................................................CCCUAGGGACUCAGUUCUG.......................  9         0.0353
...................................................................CCCUAGGGACUCAGUUCUGG......................  5         0.0164
...................................................................CCCUAGGGACUCAGUUCUGGUG....................  5         0.0186
....................................................................CCUAGGGACUCAGUUCUGGU.....................  42        0.135
....................................................................CCUAGGGACUCAGUUCUGGUG....................  3         0.00905
....................................................................CCUAGGGACUCAGUUCUGGUGC...................  1         0.00274
....................................................................CCUAGGGACUCAGUUCUGG......................  1         0.00295
.....................................................................CUAGGGACUCAGUUCUGGU.....................  1         0.0129
.......................................................................AGGGACUCAGUUCUGGU.....................  2         0.0234
.......................................................................AGGGACUCAGUUCUGGUGCCCGGCUGU...........  1         0.00213
........................................................................................GCCCGGCUGUGCUAUACCAU.  2         0.00508
........................................................................................GCCCGGCUGUGCUAUACCAUC  2         0.00425
........................................................................................GCCCGGCUGUGCUAUACCA..  1         0.00288
GACUGAGAGAACUUUGGCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUGUGAGCUCUAGCAGACGCCCUAGGGACUCAGUUCUGGUGCCCGGCUGUGCUAUACCAUC
..............((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).))))....... (-40.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 61ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 43ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 3ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 19testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 60testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 67testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 9testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 85brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 394brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 469brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 75brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 1449brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 7whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 79whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 79whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 9whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 176whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 231whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 263whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 280whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 274whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 270whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 205whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 770whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 14embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 88embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 103embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 12embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 933embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 3183embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 3492embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 305embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1945embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 5372embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 6616embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 4827bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 2802bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 2256spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 2757spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 4933spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 6452spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 5457spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 4804spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 3601spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 5834peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1336spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 5255lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 485lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 122490bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 201226bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 285643bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 23814peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 3725peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 146309bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 77742bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 13675spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 1804thymus GEO : GSM539856
ER0000000238 2765spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 2938spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 4554spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 578lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 832lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 4835lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 24492spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 522lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 5802lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 2052 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1962 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 99heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 4482brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 5172lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 341liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 971kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 833pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 3242skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 2003skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 2499salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 195testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 1434ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 5593spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 9371lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).