Deep sequencing reads for stem-loop sequence MI0004644

Stem-loop ID mmu-mir-682
Reads 
                                                                           mmu-miR-682           Count     RPM (mean number of reads per million)
.....CGGCAUCUGGCACUGUGG.........................................................................  2         0.0449
.....CGGCAUCUGGCACUGUGGUU.......................................................................  1         0.0744
......GGCAUCUGGCACUGUGGUUC......................................................................  2         0.0413
......GGCAUCUGGCACUGUGGUUCCUGC..................................................................  1         0.0264
..........UCUGGCACUGUGGUUCCUGCAUG...............................................................  3         0.0674
..........UCUGGCACUGUGGUUCCUGCAUGAAA............................................................  1         0.0264
.............GGCACUGUGGUUCCUGCAUGAAA............................................................  1         0.0307
..............GCACUGUGGUUCCUGCAUGAA.............................................................  1         0.0307
...............CACUGUGGUUCCUGCAUGAAAACAG........................................................  1         0.0264
............................................................UACAACACCACCUCUGCAGUCACA............  2         0.0485
............................................................UACAACACCACCUCUGCAGUCA..............  2         0.0318
............................................................UACAACACCACCUCUGCAGUCACAG...........  1         0.0224
............................................................UACAACACCACCUCUGCAGUC...............  1         0.0307
GCCGUCGGCAUCUGGCACUGUGGUUCCUGCAUGAAAACAGUGGCCGGCGGGGCCUGGACCUACAACACCACCUCUGCAGUCACAGUGAAGUCUGCC
......((((.((..((((((((...(((((.((.....((((...(..((.......))..)....)))).))))))))))))))).))..)))) (-31.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000034 1testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000047 1whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000054 1embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000062 1embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000221 5spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 1spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000227 7lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000236 3spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000238 2spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000240 1spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 1lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 1lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000261 1lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
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References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).