Deep sequencing reads for stem-loop sequence MI0004523

Stem-loop ID mmu-mir-669a-1
Reads 
                   mmu-miR-669a-5p                    mmu-miR-669a-3p                              Count     RPM (mean number of reads per million)
...AUGUGCAUGUGUGUAUA.............................................................................  1         0.0114
...AUGUGCAUGUGUGUAUAGUUGUGU......................................................................  1         0.0398
....UGUGCAUGUGUGUAUAGUUGUGUGU....................................................................  3         0.181
....UGUGCAUGUGUGUAUAGUUGUGU......................................................................  3         0.0537
....UGUGCAUGUGUGUAUAGUUGU........................................................................  1         0.00249
....UGUGCAUGUGUGUAUAGUUGUGUG.....................................................................  1         0.011
....UGUGCAUGUGUGUAUAGUU..........................................................................  1         0.0113
.........AUGUGUGUAUAGUUGUGU......................................................................  1         0.00249
..........UGUGUGUAUAGUUGUGU......................................................................  1         0.0104
.................AUAGUUGUGUGUGCAUGUUCAUGU........................................................  1         0.0113
..................UAGUUGUGUGUGCAUGUUCAUGU........................................................  18        0.42
..................UAGUUGUGUGUGCAUGUUCAU..........................................................  3         0.0252
..................UAGUUGUGUGUGCAUGU..............................................................  3         0.0391
..................UAGUUGUGUGUGCAUGUUCAUGUC.......................................................  3         0.0245
..................UAGUUGUGUGUGCAUGUUCAUGUCU......................................................  2         0.0224
..................UAGUUGUGUGUGCAUGUUCA...........................................................  1         0.00249
...................AGUUGUGUGUGCAUGUUCAUGUCU......................................................  576       20
...................AGUUGUGUGUGCAUGUUCAUGU........................................................  341       13.1
...................AGUUGUGUGUGCAUGUUCAUGUC.......................................................  278       7.32
...................AGUUGUGUGUGCAUGUUCAU..........................................................  41        0.919
...................AGUUGUGUGUGCAUGUUCAUG.........................................................  39        0.743
...................AGUUGUGUGUGCAUGUUC............................................................  6         0.0415
...................AGUUGUGUGUGCAUGUU.............................................................  3         0.0726
...................AGUUGUGUGUGCAUGUUCAUGUCUAU....................................................  2         0.0394
...................AGUUGUGUGUGCAUGUUCA...........................................................  2         0.00497
...................AGUUGUGUGUGCAUGUUCAUGUCUA.....................................................  1         0.011
....................GUUGUGUGUGCAUGUUCAUGUC.......................................................  2         0.0426
....................GUUGUGUGUGCAUGUUCAUGU........................................................  1         0.00249
....................GUUGUGUGUGCAUGUUCAUGUCU......................................................  1         0.0398
.....................UUGUGUGUGCAUGUUCAUGUCU......................................................  3         0.0954
.....................UUGUGUGUGCAUGUUCAUGUC.......................................................  2         0.0253
......................UGUGUGUGCAUGUUCAUGUC.......................................................  3         0.0337
......................UGUGUGUGCAUGUUCAUGU........................................................  2         0.0219
.......................GUGUGUGCAUGUUCAUGU........................................................  1         0.0366
.........................GUGUGCAUGUUCAUGUCU......................................................  4         0.0369
.........................GUGUGCAUGUUCAUGUC.......................................................  1         0.0129
..........................UGUGCAUGUUCAUGUCU......................................................  1         0.00249
.....................................................AUACAUAACAUACACACACACGUAU...................  2         0.0227
.....................................................AUACAUAACAUACACACACACGU.....................  1         0.0129
......................................................UACAUAACAUACACACACACGU.....................  9         0.253
......................................................UACAUAACAUACACACACACGUAU...................  4         0.0455
......................................................UACAUAACAUACACACACACGUA....................  3         0.0533
......................................................UACAUAACAUACACACACACG......................  1         0.0113
.......................................................ACAUAACAUACACACACACGUAU...................  1702      59.6
.......................................................ACAUAACAUACACACACACGUA....................  491       14.4
.......................................................ACAUAACAUACACACACACGU.....................  229       8.45
.......................................................ACAUAACAUACACACACACG......................  21        0.356
.......................................................ACAUAACAUACACACACACGUAUA..................  7         0.162
.......................................................ACAUAACAUACACACAC.........................  3         0.698
.......................................................ACAUAACAUACACACACAC.......................  2         0.0227
........................................................CAUAACAUACACACACACGUAU...................  317       6.81
........................................................CAUAACAUACACACACACGUA....................  31        0.542
........................................................CAUAACAUACACACACACGU.....................  4         0.0995
........................................................CAUAACAUACACACACACGUAUA..................  4         0.0754
........................................................CAUAACAUACACACACA........................  2         0.0227
.........................................................AUAACAUACACACACACGUAU...................  80        2.98
.........................................................AUAACAUACACACACACGUA....................  25        0.561
.........................................................AUAACAUACACACACACGUAUA..................  19        0.276
.........................................................AUAACAUACACACACACGU.....................  10        0.184
.........................................................AUAACAUACACACACAC.......................  1         0.0129
..........................................................UAACAUACACACACACGUAU...................  40        1.77
..........................................................UAACAUACACACACACGUA....................  4         0.0526
..........................................................UAACAUACACACACACGUAUA..................  3         0.032
...........................................................AACAUACACACACACGUAU...................  13        0.402
...........................................................AACAUACACACACACGUA....................  4         0.165
............................................................ACAUACACACACACGUA....................  1         0.0113
............................................................ACAUACACACACACGUAU...................  1         0.00249
.............................................................CAUACACACACACGUAU...................  25        0.367
..............................................................AUACACACACACGUAUA..................  1         0.0139
UGUAUGUGCAUGUGUGUAUAGUUGUGUGUGCAUGUUCAUGUCUAUAUUUGAAUAUACAUAACAUACACACACACGUAUAAACGCAAGCACACAUACA
.((((((((.(((((.((((..((((((((.(((((.((((.(((......))).))))))))).))))))))..)))).))))).)))))..))). (-36.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 8ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 10ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 26testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 142testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 223testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 28testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 40brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 112brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 198brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 25brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 982brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000042 16whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 6whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 3whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 28whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 50whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 59whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 50whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 57whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 49whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 58whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 302whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 94embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 176embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 445embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 61embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 220embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 460embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 740embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 58embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 263embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 361embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 834embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 182bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 42bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 23spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 7spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 53spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 150spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 107spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 56spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 4peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 15spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 20lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 12lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 37bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000231 73bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 462peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 36peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 10bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 37bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 10spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 162thymus GEO : GSM539856
ER0000000238 367spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 260spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 49spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 31lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 68lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 515lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 347spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 136lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 245lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 1429 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 70 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 13brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000253 1kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 4pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 58skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 92skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 100salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 7testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 5ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 34spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 41lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).