Deep sequencing reads for stem-loop sequence MI0003633

Stem-loop ID hsa-mir-619
Reads 
                                                                hsa-miR-619                          Count     RPM (mean number of reads per million)
...............CCCAAAAUGCUGGGAUU...................................................................  3         13.6
.......................GCUGGGAUUACAGGCAUGAGCC......................................................  6         0.102
.......................GCUGGGAUUACAGGCAUGAGCCAC....................................................  2         0.0185
.......................GCUGGGAUUACAGGCAUGAGC.......................................................  2         0.0185
.......................GCUGGGAUUACAGGCAUGAGCCA.....................................................  2         0.0185
........................CUGGGAUUACAGGCAUGAGCCA.....................................................  2         0.0519
........................CUGGGAUUACAGGCAUGAGCC......................................................  2         0.0185
..........................GGGAUUACAGGCAUGAG........................................................  5         0.085
..........................GGGAUUACAGGCAUGAGCCA.....................................................  4         6.84
..........................GGGAUUACAGGCAUGAGCC......................................................  1         3.36
CGCCCACCUCAGCCUCCCAAAAUGCUGGGAUUACAGGCAUGAGCCACUGCGGUCGACCAUGACCUGGACAUGUUUGUGCCCAGUACUGUCAGUUUGCAG
.((..((..(((..........(((((((..((((((((((..(((....((((......))))))).))))))))))))))))))))...))..)).. (-31.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 1embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 1embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 30melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000105 7 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000108 2melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000110 11melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 4melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 2melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000114 2melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000135 2 GEO : GSM532871 normal cervix [ Witten D et al.]
ER0000000140 1squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000147 1 GEO : GSM532883 normal cervix [ Witten D et al.]
ER0000000149 2 GEO : GSM532885 normal cervix [ Witten D et al.]
ER0000000154 1squamous cell GEO : GSM532890 [ Witten D et al.]
ER0000000156 2squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000157 32 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000159 1 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000161 1 GEO : GSM532897 normal cervix [ Witten D et al.]
ER0000000164 4squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000165 2 GEO : GSM532901 normal cervix [ Witten D et al.]
ER0000000169 5 GEO : GSM532905 normal cervix [ Witten D et al.]
ER0000000171 3 GEO : GSM532907 normal cervix [ Witten D et al.]
ER0000000174 5squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000177 5 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000178 1squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000179 1 GEO : GSM532915 normal cervix [ Witten D et al.]
ER0000000181 3 GEO : GSM532917 normal cervix [ Witten D et al.]
ER0000000183 2whole body GEO : GSM532919 normal cervix [ Witten D et al.]
ER0000000184 5squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000185 4 GEO : GSM532921 normal cervix [ Witten D et al.]
ER0000000186 1squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000187 1 GEO : GSM532923 normal cervix [ Witten D et al.]
ER0000000188 2squamous cell GEO : GSM532924 [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).