Deep sequencing reads for stem-loop sequence MI0003609

Stem-loop ID hsa-mir-597
Reads 
                  hsa-miR-597                                                                      Count     RPM (mean number of reads per million)
...............UGUGUCACUCGAUGACCACUGU............................................................  1         2.95
.........................................................UGGUUCUCUUGUGGCUCAAGCGU.................  2         0.366
UACUUACUCUACGUGUGUGUCACUCGAUGACCACUGUGAAGACAGUAAAAUGUACAGUGGUUCUCUUGUGGCUCAAGCGUAAUGUAGAGUACUGGUC
.(((((((((((((.((.(((((..((.(((((((((....(((......)))))))))))).))..))))).))......))))))))))..))). (-36.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000002 1embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000106 2melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000108 2melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).