Deep sequencing reads for stem-loop sequence MI0003522

Stem-loop ID mmu-mir-542
Reads 
             mmu-miR-542-5p                        mmu-miR-542-3p                       Count     RPM (mean number of reads per million)
............UCUCGGGGAUCAUCAUGUCACGAGA................................................  5         0.0759
.............CUCGGGGAUCAUCAUGUCACGA..................................................  2465      31.5
.............CUCGGGGAUCAUCAUGUCACG...................................................  316       4.02
.............CUCGGGGAUCAUCAUGUCACGAG.................................................  121       1.92
.............CUCGGGGAUCAUCAUGUCAC....................................................  89        0.692
.............CUCGGGGAUCAUCAUGUCACGAGA................................................  60        1.09
.............CUCGGGGAUCAUCAUGUCA.....................................................  22        0.0854
.............CUCGGGGAUCAUCAUGUC......................................................  9         0.0297
.............CUCGGGGAUCAUCAUGUCACGAGAU...............................................  6         0.137
.............CUCGGGGAUCAUCAUGU.......................................................  1         0.00257
..............UCGGGGAUCAUCAUGUCACGAGA................................................  28        0.346
..............UCGGGGAUCAUCAUGUCACGA..................................................  21        0.283
..............UCGGGGAUCAUCAUGUCACGAG.................................................  9         0.0749
..............UCGGGGAUCAUCAUGUCACG...................................................  1         0.0105
...............CGGGGAUCAUCAUGUCACGA..................................................  1         0.0092
................GGGGAUCAUCAUGUCACGAG.................................................  94        0.872
................GGGGAUCAUCAUGUCACGA..................................................  8         0.0868
................GGGGAUCAUCAUGUCACG...................................................  2         0.00514
.................GGGAUCAUCAUGUCACGA..................................................  9         0.281
.................GGGAUCAUCAUGUCACG...................................................  2         0.00514
..................................................UUGUGACAGAUUGAUAACUGA..............  95        1.43
..................................................UUGUGACAGAUUGAUAACUGAAA............  44        0.581
..................................................UUGUGACAGAUUGAUAACU................  39        0.15
..................................................UUGUGACAGAUUGAUAACUGAA.............  20        0.178
..................................................UUGUGACAGAUUGAUAACUG...............  13        0.089
..................................................UUGUGACAGAUUGAUAAC.................  10        0.0183
..................................................UUGUGACAGAUUGAUAACUGAAAG...........  3         0.061
...................................................UGUGACAGAUUGAUAACUGAAAG...........  11814     136
...................................................UGUGACAGAUUGAUAACUGAAA............  7562      98
...................................................UGUGACAGAUUGAUAACUGA..............  5620      66.6
...................................................UGUGACAGAUUGAUAACUGAA.............  2490      28.3
...................................................UGUGACAGAUUGAUAACUG...............  1081      5.63
...................................................UGUGACAGAUUGAUAACU................  47        0.729
...................................................UGUGACAGAUUGAUAACUGAAAGG..........  21        0.169
...................................................UGUGACAGAUUGAUAAC.................  20        0.197
....................................................GUGACAGAUUGAUAACUGAAAG...........  27        0.299
....................................................GUGACAGAUUGAUAACUGAAA............  26        0.575
....................................................GUGACAGAUUGAUAACUGA..............  11        0.123
....................................................GUGACAGAUUGAUAACUGAA.............  5         0.104
.....................................................UGACAGAUUGAUAACUGAAAG...........  38        0.75
.....................................................UGACAGAUUGAUAACUGAAA............  11        0.0857
.....................................................UGACAGAUUGAUAACUGA..............  3         0.0271
.....................................................UGACAGAUUGAUAACUGAAAGG..........  1         0.00257
......................................................GACAGAUUGAUAACUGAAA............  13        0.0886
......................................................GACAGAUUGAUAACUGAAAG...........  9         0.0764
.......................................................ACAGAUUGAUAACUGAAAG...........  5         0.0794
.......................................................ACAGAUUGAUAACUGAAA............  4         0.0314
........................................................CAGAUUGAUAACUGAAAG...........  23        0.268
........................................................CAGAUUGAUAACUGAAA............  7         0.084
.........................................................AGAUUGAUAACUGAAAG...........  14        0.166
GGAUCUCAGACGUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCCCUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCC
((.((((((((.(.((((..((((...(((((((((.(((....)))..)))))))))...))))..)))).).)))))))).)) (-38.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 1ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 99ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 103ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 6ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 3testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 18testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 32testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 4testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 5brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 11brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 38brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 2brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 151brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 51whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 251whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 474whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 65whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 1449whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 2035whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 2221whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 2140whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 2091whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 2021whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 1921whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 7487whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 317embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1076embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 2014embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 238embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 463embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 822embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1521embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 145embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 185embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 301embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 539embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 206bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 197bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 49spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 23spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 57spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 14spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 37spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 43spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 13spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 6peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 2spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 13lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 11lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 544bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 479bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 218bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 914peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 155peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 116bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 182bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 128spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 34thymus GEO : GSM539856
ER0000000238 33spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 108spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 30spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 62lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 78lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 287lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 587spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 52lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 16lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 796 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 126 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 11heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 31brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 270lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 25liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 139kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 54pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 298skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 93skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 128salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 47testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 217ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 37spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 9lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).