Deep sequencing reads for stem-loop sequence MI0003513

Stem-loop ID hsa-mir-455
Reads 
               hsa-miR-455-5p                       hsa-miR-455-3p                                Count     RPM (mean number of reads per million)
............GGGUAUGUGCCUUUGGACUACAUCG...........................................................  74        119
............GGGUAUGUGCCUUUGGACUACAU.............................................................  17        35.7
............GGGUAUGUGCCUUUGGACUACA..............................................................  11        23
............GGGUAUGUGCCUUUGGACUACAUC............................................................  3         6.53
............GGGUAUGUGCCUUUGGA...................................................................  1         4.15
............GGGUAUGUGCCUUUGGACUAC...............................................................  1         1.91
..............GUAUGUGCCUUUGGACUACAU.............................................................  49        3.16
..............GUAUGUGCCUUUGGACUACAUCGU..........................................................  18        0.424
..............GUAUGUGCCUUUGGACUACA..............................................................  13        0.422
..............GUAUGUGCCUUUGGACUACAUCG...........................................................  11        0.184
..............GUAUGUGCCUUUGGACUACAUC............................................................  3         0.0257
..............GUAUGUGCCUUUGGACUACAUCGUG.........................................................  2         0.0363
...............UAUGUGCCUUUGGACUACAUCG...........................................................  186       11.8
...............UAUGUGCCUUUGGACUACAUCGU..........................................................  80        13.5
...............UAUGUGCCUUUGGACUACAUCGUG.........................................................  12        0.181
...............UAUGUGCCUUUGGACUACAUC............................................................  7         0.101
...............UAUGUGCCUUUGGACUACA..............................................................  5         0.0564
...............UAUGUGCCUUUGGACUACAU.............................................................  3         0.237
................AUGUGCCUUUGGACUACAUCGU..........................................................  1         1.66
.................UGUGCCUUUGGACUACAUCGUG.........................................................  11        16.3
.................UGUGCCUUUGGACUACAUCGU..........................................................  2         0.045
..................................................CAUGCAGUCCAUGGGCAUAUACAC......................  1         0.211
..................................................CAUGCAGUCCAUGGGCAUAUACA.......................  1         0.125
...................................................AUGCAGUCCAUGGGCAUAUACA.......................  50        1.2
...................................................AUGCAGUCCAUGGGCAUAUAC........................  27        31.3
...................................................AUGCAGUCCAUGGGCAUAUACAC......................  25        14.6
...................................................AUGCAGUCCAUGGGCAUAU..........................  10        5.3
...................................................AUGCAGUCCAUGGGCAUAUA.........................  4         0.0433
....................................................UGCAGUCCAUGGGCAUAUACAC......................  152       34.5
....................................................UGCAGUCCAUGGGCAUAUACA.......................  75        7.55
....................................................UGCAGUCCAUGGGCAUAUAC........................  33        17.9
....................................................UGCAGUCCAUGGGCAUAU..........................  2         0.422
.....................................................GCAGUCCAUGGGCAUAUACAC......................  693       138
.....................................................GCAGUCCAUGGGCAUAUACA.......................  339       37.3
.....................................................GCAGUCCAUGGGCAUAUACACU.....................  160       44.2
.....................................................GCAGUCCAUGGGCAUAUAC........................  70        39.1
.....................................................GCAGUCCAUGGGCAUAUACACUU....................  4         0.0343
.....................................................GCAGUCCAUGGGCAUAU..........................  3         29.5
.....................................................GCAGUCCAUGGGCAUAUA.........................  1         0.211
......................................................CAGUCCAUGGGCAUAUACACUU....................  13        0.243
......................................................CAGUCCAUGGGCAUAUACAC......................  2         1.79
......................................................CAGUCCAUGGGCAUAUACA.......................  1         0.211
UCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUC
.....(((.(((((((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).....)))))..)))......... (-41.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 149embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 1166embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 40melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 2melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 486 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000106 30melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 9melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 335melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 9melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 49melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 15melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 218melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 97melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000135 1 GEO : GSM532871 normal cervix [ Witten D et al.]
ER0000000138 4squamous cell GEO : GSM532874 [ Witten D et al.]
ER0000000140 5squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000141 1 GEO : GSM532877 normal cervix [ Witten D et al.]
ER0000000147 17 GEO : GSM532883 normal cervix [ Witten D et al.]
ER0000000150 3squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000156 29squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000157 9 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000160 59squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000161 36 GEO : GSM532897 normal cervix [ Witten D et al.]
ER0000000164 30squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000165 33 GEO : GSM532901 normal cervix [ Witten D et al.]
ER0000000169 2 GEO : GSM532905 normal cervix [ Witten D et al.]
ER0000000171 35 GEO : GSM532907 normal cervix [ Witten D et al.]
ER0000000172 1squamous cell GEO : GSM532908 [ Witten D et al.]
ER0000000174 10squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000175 1 GEO : GSM532911 normal cervix [ Witten D et al.]
ER0000000178 4squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 30squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000181 10 GEO : GSM532917 normal cervix [ Witten D et al.]
ER0000000186 46squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000188 91squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000193 2 GEO : GSM532929 normal cervix [ Witten D et al.]
ER0000000262 25 GEO : GSM337570 antibody: anti-Ago1 4B8
ER0000000263 9 GEO : GSM337571 antibody: anti-Ago2 11A9
ER0000000264 57 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000265 2 GEO : GSM368182 tissue: clinically negative of NPC [ Zhu JY et al.]
ER0000000266 33 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000267 2 GEO : GSM368184 tissue: clinically negative of NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).