Deep sequencing reads for stem-loop sequence MI0003195

Stem-loop ID

hsa-mir-508

Reads

                         hsa-miR-508-5p                     hsa-miR-508-3p                                           Count     RPM (mean number of reads per million)
.........................UACUCCAGAGGGCGUCACUCAU....................................................................  1644      53.4
.........................UACUCCAGAGGGCGUCACUCAUG...................................................................  840       29.9
.........................UACUCCAGAGGGCGUCACUCAUGU..................................................................  325       10.5
.........................UACUCCAGAGGGCGUCACUCA.....................................................................  203       8.14
.........................UACUCCAGAGGGCGUCACUC......................................................................  31        1.19
.........................UACUCCAGAGGGCGUCACU.......................................................................  22        1.32
.........................UACUCCAGAGGGCGUCAC........................................................................  12        0.372
.........................UACUCCAGAGGGCGUCACUCAUGUAA................................................................  3         0.0571
.........................UACUCCAGAGGGCGUCACUCAUGUA.................................................................  3         0.0571
............................................................UGAUUGUAGCCUUUUGGAGUAGA................................  12956     553
............................................................UGAUUGUAGCCUUUUGGAGUAG.................................  522       22.8
............................................................UGAUUGUAGCCUUUUGGAG....................................  29        1.29
............................................................UGAUUGUAGCCUUUUGGAGUAGAG...............................  12        0.416
............................................................UGAUUGUAGCCUUUUGGAGUA..................................  4         0.187
............................................................UGAUUGUAGCCUUUUGGAGU...................................  2         0.0381
.............................................................GAUUGUAGCCUUUUGGAGUAGA................................  66        2.69
..............................................................AUUGUAGCCUUUUGGAGUAGA................................  260       11.8
..............................................................AUUGUAGCCUUUUGGAGUAG.................................  7         0.306
CCACCUUCAGCUGAGUGUAGUGCCCUACUCCAGAGGGCGUCACUCAUGUAAACUAAAACAUGAUUGUAGCCUUUUGGAGUAGAGUAAUACACAUCACGUAACGCAUAUUUGGUGG
(((((....((((((((((.(((.((((((((((((((..((.((((((........)))))).))..)))))))))))))).))).))))).)))......))......))))) (-49.80)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000103	5797	melanoblast	GEO : GSM458535		[ Stark MS et al.]
ER0000000104	1198	melanocyte	GEO : GSM458536		[ Stark MS et al.]
ER0000000105	5		GEO : GSM458537	cell line: primary giant congental nevus	[ Stark MS et al.]
ER0000000106	291	melanoma	GEO : GSM458538	cell line: secondary acral melanoma	[ Stark MS et al.]
ER0000000107	392	melanoma	GEO : GSM458539	cell line: secondary mucosal melanoma	[ Stark MS et al.]
ER0000000108	3211	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000109	25	melanoma	GEO : GSM458541	cell line: primary uveal melanoma	[ Stark MS et al.]
ER0000000110	738	melanoma	GEO : GSM458542	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000112	4437	melanoma	GEO : GSM458544	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000113	4112	melanoma	GEO : GSM458545	cell line: secondary cutaneous melanoma from a chronically sun-damaged body site	[ Stark MS et al.]
ER0000000114	843	melanoma	GEO : GSM458546	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000155	1		GEO : GSM532891	normal cervix	[ Witten D et al.]
ER0000000163	1		GEO : GSM532899	normal cervix	[ Witten D et al.]
ER0000000173	1		GEO : GSM532909	normal cervix	[ Witten D et al.]
ER0000000179	1		GEO : GSM532915	normal cervix	[ Witten D et al.]
ER0000000183	3	whole body	GEO : GSM532919	normal cervix	[ Witten D et al.]

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).