Deep sequencing reads for stem-loop sequence MI0003146

Stem-loop ID hsa-mir-520f
Reads 
                                                        hsa-miR-520f                     Count     RPM (mean number of reads per million)
.....................................................CAAGUGCUUCCUUUUAGAGGGU............  23        24.2
.....................................................CAAGUGCUUCCUUUUAGAGG..............  4         4.2
.....................................................CAAGUGCUUCCUUUUAGAGGG.............  3         3.15
.....................................................CAAGUGCUUCCUUUUAGAGGGUU...........  2         2.1
UCUCAGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUGGUCAGAAAGAAAAGCAAGUGCUUCCUUUUAGAGGGUUACCGUUUGGGA
((((((((.((((((((((((((((((((((((.((....((.....))..)).)))))))))))))))))))))))).)))))))) (-52.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 44embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000114 4melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000166 1squamous cell GEO : GSM532902 [ Witten D et al.]
ER0000000167 1 GEO : GSM532903 normal cervix [ Witten D et al.]
ER0000000177 1 GEO : GSM532913 normal cervix [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).