Deep sequencing reads for stem-loop sequence MI0002401

Stem-loop ID mmu-mir-466a
Reads 
         mmu-miR-466a-5p                        mmu-miR-466a-3p            Count     RPM (mean number of reads per million)
.........UUAUGUGUGUGUACAUGUACAU..........................................  18        0.351
.........UUAUGUGUGUGUACAUGUACA...........................................  11        0.153
.........UUAUGUGUGUGUACAUGUAC............................................  5         0.0969
.........UUAUGUGUGUGUACAUGUA.............................................  1         0.0361
.........UUAUGUGUGUGUACAUGUACAUAU........................................  1         0.00914
..........UAUGUGUGUGUACAUGUACAU..........................................  172       7.91
..........UAUGUGUGUGUACAUGUACA...........................................  37        0.768
..........UAUGUGUGUGUACAUGUACAUAU........................................  29        1.84
..........UAUGUGUGUGUACAUGUACAUAUG.......................................  16        0.441
..........UAUGUGUGUGUACAUGUAC............................................  9         0.172
..........UAUGUGUGUGUACAUGUACAUA.........................................  6         0.107
..........UAUGUGUGUGUACAUGU..............................................  1         0.0109
..........UAUGUGUGUGUACAUGUACAUAUGU......................................  1         0.0696
..........UAUGUGUGUGUACAUGUA.............................................  1         0.0393
...........AUGUGUGUGUACAUGUACAU..........................................  17        0.28
...........AUGUGUGUGUACAUGUACA...........................................  3         0.0578
...........AUGUGUGUGUACAUGUACAUAU........................................  2         0.0133
...........AUGUGUGUGUACAUGUAC............................................  1         0.0109
...........AUGUGUGUGUACAUGUACAUA.........................................  1         0.0112
............UGUGUGUGUACAUGUACA...........................................  12        0.233
............UGUGUGUGUACAUGUACAU..........................................  8         0.861
............UGUGUGUGUACAUGUACAUAUGUG.....................................  1         0.0112
............UGUGUGUGUACAUGUACAUA.........................................  1         0.0109
.............GUGUGUGUACAUGUACAU..........................................  4         0.0729
...............................................CAUAUACAUACACGCACACAUA....  3         0.0161
...............................................CAUAUACAUACACGCACACAUAAG..  1         0.00914
................................................AUAUACAUACACGCACACAUA....  4         0.0256
................................................AUAUACAUACACGCACACAUAAGA.  3         0.0382
................................................AUAUACAUACACGCACACAUAA...  2         0.0152
................................................AUAUACAUACACGCACACAU.....  1         0.00245
.................................................UAUACAUACACGCACACAUAAGA.  781       19.2
.................................................UAUACAUACACGCACACAUAAG..  358       11.4
.................................................UAUACAUACACGCACACAUAA...  55        2.05
.................................................UAUACAUACACGCACACAUA....  50        2.23
.................................................UAUACAUACACGCACACAU.....  27        0.649
.................................................UAUACAUACACGCACACAUAAGAC  18        0.394
.................................................UAUACAUACACGCACAC.......  8         0.763
..................................................AUACAUACACGCACACAUAAGA.  815       22.8
..................................................AUACAUACACGCACACAUAAG..  185       4.62
..................................................AUACAUACACGCACACAUAAGAC  101       3.31
..................................................AUACAUACACGCACACAUAA...  46        3.49
..................................................AUACAUACACGCACACAUA....  10        0.263
..................................................AUACAUACACGCACACA......  1         0.00245
..................................................AUACAUACACGCACACAU.....  1         0.0121
...................................................UACAUACACGCACACAUAAGA.  71        1.43
...................................................UACAUACACGCACACAUAAGAC  19        0.241
...................................................UACAUACACGCACACAUAAG..  10        0.118
...................................................UACAUACACGCACACAUAA...  2         0.132
....................................................ACAUACACGCACACAUAAGA.  11        0.495
....................................................ACAUACACGCACACAUAAG..  4         0.0459
.....................................................CAUACACGCACACAUAAGA.  9         0.223
.....................................................CAUACACGCACACAUAAG..  5         0.408
.....................................................CAUACACGCACACAUAA...  1         0.0112
......................................................AUACACGCACACAUAAGA.  23        0.447
......................................................AUACACGCACACAUAAG..  12        0.115
......................................................AUACACGCACACAUAAGAC  1         0.00245
.......................................................UACACGCACACAUAAGA.  24        1.03
.......................................................UACACGCACACAUAAGAC  5         0.0538
........................................................ACACGCACACAUAAGAC  49        0.784
UAUAUGUGUUUAUGUGUGUGUACAUGUACAUAUGUGAAUAUGAUAUCCAUAUACAUACACGCACACAUAAGAC
..(((((((...((((((((((.((((((((((....))))).))..))).)))))))))).))))))).... (-22.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 5ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 3ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 34testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 136testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 162testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 15testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 29brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 122brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 127brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 18brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 711brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 4whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 12whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 18whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 5whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 35whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 59whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 69whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 70whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 66whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 57whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 69whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 321whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 78embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 195embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 332embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 46embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 346embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 786embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 984embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 87embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 148embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 243embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 440embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 22bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 10bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 12spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 5spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 7spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 33spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 66spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 60spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 32spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 7spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 10lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 3lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 34bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000231 13bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 72peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 9peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 4bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 13bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 4spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 52thymus GEO : GSM539856
ER0000000238 113spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 101spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 22spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 22lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 24lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 125lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 258spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 41lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 191lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 535 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 26 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 5brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000253 3kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 2pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 8skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 20skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 19salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 5testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 2ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 26spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 12lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).