Deep sequencing reads for stem-loop sequence MI0001730

Stem-loop ID mmu-mir-451a
Reads 
                  mmu-miR-451a                                            Count     RPM (mean number of reads per million)
CUUGGGAAUGGCGAGGAAACCGU.................................................  4         0.0825
..............GGAAACCGUUACCAUUACUGAGUUU.................................  3         0.0316
...............GAAACCGUUACCAUUACUGAGUU..................................  37        0.268
...............GAAACCGUUACCAUUACUGAGUUU.................................  4         0.0458
...............GAAACCGUUACCAUUACUGAGUUUAGU..............................  1         0.00236
................AAACCGUUACCAUUACUGAGUUUAGU..............................  66805     780
................AAACCGUUACCAUUACUGAGUUUAG...............................  65959     761
................AAACCGUUACCAUUACUGAGUUU.................................  38881     502
................AAACCGUUACCAUUACUGAGUU..................................  24189     422
................AAACCGUUACCAUUACUGAGU...................................  7413      119
................AAACCGUUACCAUUACUGAGUUUA................................  5220      84
................AAACCGUUACCAUUACUGA.....................................  2996      37.8
................AAACCGUUACCAUUACUGAG....................................  1979      22.2
................AAACCGUUACCAUUACUGAGUUUAGUA.............................  1815      19.1
................AAACCGUUACCAUUACUG......................................  55        0.527
................AAACCGUUACCAUUACU.......................................  21        0.206
................AAACCGUUACCAUUACUGAGUUUAGUAA............................  8         0.0252
................AAACCGUUACCAUUACUGAGUUUAGUAAU...........................  7         0.0319
.................AACCGUUACCAUUACUGAGUUUA................................  28853     322
.................AACCGUUACCAUUACUGAGUU..................................  207       4.08
.................AACCGUUACCAUUACUGAGUUU.................................  194       3.34
.................AACCGUUACCAUUACUGAGUUUAG...............................  148       2.19
.................AACCGUUACCAUUACUGAGUUUAGU..............................  103       1.73
.................AACCGUUACCAUUACUGAGU...................................  30        0.18
.................AACCGUUACCAUUACUGAG....................................  7         0.0616
.................AACCGUUACCAUUACUGA.....................................  3         0.0372
.................AACCGUUACCAUUACUGAGUUUAGUA.............................  2         0.00503
.................AACCGUUACCAUUACUG......................................  1         0.0116
.................AACCGUUACCAUUACUGAGUUUAGUAA............................  1         0.00988
..................ACCGUUACCAUUACUGAGUU..................................  64        0.73
..................ACCGUUACCAUUACUGAGUUU.................................  62        0.543
..................ACCGUUACCAUUACUGAGUUUA................................  28        0.288
..................ACCGUUACCAUUACUGAG....................................  26        0.607
..................ACCGUUACCAUUACUGAGUUUAGUAAU...........................  17        0.188
..................ACCGUUACCAUUACUGAGUUUAGU..............................  7         0.068
..................ACCGUUACCAUUACUGAGUUUAG...............................  4         0.0251
..................ACCGUUACCAUUACUGA.....................................  3         0.0149
..................ACCGUUACCAUUACUGAGU...................................  3         0.00708
..................ACCGUUACCAUUACUGAGUUUAGUAA............................  2         0.0128
...................CCGUUACCAUUACUGAGUUUAG...............................  29        0.215
...................CCGUUACCAUUACUGAGUUU.................................  26        0.444
...................CCGUUACCAUUACUGAGUUUAGU..............................  21        0.248
...................CCGUUACCAUUACUGAGUU..................................  19        0.266
...................CCGUUACCAUUACUGAGUUUAGUAAU...........................  8         0.0935
...................CCGUUACCAUUACUGAGUUUA................................  7         0.129
...................CCGUUACCAUUACUGAGU...................................  6         0.136
...................CCGUUACCAUUACUGAG....................................  1         0.0108
...................CCGUUACCAUUACUGAGUUUAGUAAUG..........................  1         0.0105
....................CGUUACCAUUACUGAGUU..................................  100       1.59
....................CGUUACCAUUACUGAGUUU.................................  99        3.03
....................CGUUACCAUUACUGAGUUUAG...............................  67        0.84
....................CGUUACCAUUACUGAGUUUAGUAAU...........................  61        1.1
....................CGUUACCAUUACUGAGUUUAGU..............................  39        0.65
....................CGUUACCAUUACUGAGU...................................  32        0.464
....................CGUUACCAUUACUGAGUUUA................................  21        0.211
....................CGUUACCAUUACUGAGUUUAGUAAUG..........................  12        0.17
....................CGUUACCAUUACUGAGUUUAGUAA............................  6         0.0625
.....................GUUACCAUUACUGAGUUU.................................  531       7.53
.....................GUUACCAUUACUGAGUU..................................  199       2.59
.....................GUUACCAUUACUGAGUUUAG...............................  199       1.84
.....................GUUACCAUUACUGAGUUUAGU..............................  181       2.69
.....................GUUACCAUUACUGAGUUUAGUAAU...........................  149       3.3
.....................GUUACCAUUACUGAGUUUA................................  57        0.38
.....................GUUACCAUUACUGAGUUUAGUAAUG..........................  27        0.368
.....................GUUACCAUUACUGAGUUUAGUAA............................  23        0.441
.....................GUUACCAUUACUGAGUUUAGUA.............................  1         0.0105
......................UUACCAUUACUGAGUUUAGUAAU...........................  519       10.1
......................UUACCAUUACUGAGUUUAG...............................  263       4.35
......................UUACCAUUACUGAGUUUAGU..............................  193       3.01
......................UUACCAUUACUGAGUUU.................................  140       1.56
......................UUACCAUUACUGAGUUUAGUAAUG..........................  97        1.47
......................UUACCAUUACUGAGUUUAGUAA............................  92        1.41
......................UUACCAUUACUGAGUUUAGUA.............................  36        0.402
......................UUACCAUUACUGAGUUUA................................  35        0.412
.......................UACCAUUACUGAGUUUAGUAAU...........................  92        1.37
.......................UACCAUUACUGAGUUUAG...............................  71        0.765
.......................UACCAUUACUGAGUUUAGU..............................  61        0.641
.......................UACCAUUACUGAGUUUA................................  22        0.429
.......................UACCAUUACUGAGUUUAGUAA............................  8         0.0837
.......................UACCAUUACUGAGUUUAGUA.............................  2         0.0221
.......................UACCAUUACUGAGUUUAGUAAUG..........................  2         0.0232
........................ACCAUUACUGAGUUUAG...............................  39        0.379
........................ACCAUUACUGAGUUUAGU..............................  38        0.629
........................ACCAUUACUGAGUUUAGUAAU...........................  18        0.318
........................ACCAUUACUGAGUUUAGUAA............................  1         0.00267
.........................CCAUUACUGAGUUUAGUAAU...........................  25        0.401
.........................CCAUUACUGAGUUUAGU..............................  4         0.0394
.........................CCAUUACUGAGUUUAGUAA............................  2         0.0209
..........................CAUUACUGAGUUUAGUAAU...........................  44        0.856
..........................CAUUACUGAGUUUAGUAAUG..........................  11        0.162
..........................CAUUACUGAGUUUAGUAA............................  8         0.0604
...........................AUUACUGAGUUUAGUAAUGG.........................  27        0.202
...........................AUUACUGAGUUUAGUAAU...........................  17        0.258
...........................AUUACUGAGUUUAGUAA............................  11        0.162
...........................AUUACUGAGUUUAGUAAUG..........................  5         0.0441
............................UUACUGAGUUUAGUAAU...........................  19        0.318
............................UUACUGAGUUUAGUAAUG..........................  1         0.0105
.............................UACUGAGUUUAGUAAUG..........................  2         0.0217
...............................CUGAGUUUAGUAAUGGUAAC.....................  3         0.0337
...............................CUGAGUUUAGUAAUGGUAACGG...................  1         0.0101
.................................GAGUUUAGUAAUGGUAACGGUUCU...............  2         0.0202
..................................AGUUUAGUAAUGGUAACG....................  11        0.387
..................................AGUUUAGUAAUGGUAACGG...................  2         0.0136
..................................AGUUUAGUAAUGGUAAC.....................  1         0.0105
...................................GUUUAGUAAUGGUAACG....................  6         0.039
....................................UUUAGUAAUGGUAACGGUUCU...............  7         0.131
....................................UUUAGUAAUGGUAACGG...................  4         0.0716
....................................UUUAGUAAUGGUAACGGUUCUC..............  3         0.0336
....................................UUUAGUAAUGGUAACGGUUC................  2         0.0232
....................................UUUAGUAAUGGUAACGGUU.................  1         0.00236
.....................................UUAGUAAUGGUAACGGUUCUC..............  1         0.0669
..........................................AAUGGUAACGGUUCUCUUGCUG........  1         0.00394
..........................................AAUGGUAACGGUUCUCUUG...........  1         0.0021
...........................................AUGGUAACGGUUCUCUUGCUGCU......  1         0.0109
...........................................AUGGUAACGGUUCUCUUGCU.........  1         0.00229
............................................UGGUAACGGUUCUCUUGCUGCU......  1         0.0109
CUUGGGAAUGGCGAGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAACGGUUCUCUUGCUGCUCCCACA
..(((((..((((((..(((((((((((((((((....)))))))))))))))))..))))))..))))).. (-45.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 10ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 973ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 186ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 89ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 104testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 525testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 151testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 74testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 860brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 3281brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 677brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 518brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 22836brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 386whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 3125whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 828whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 530whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 10286whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 15860whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 18981whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 17774whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 18026whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 18362whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 16724whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 77671whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 1558embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 8323embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1378embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 1227embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1910embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 9707embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1609embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 916embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1686embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 4379embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1317embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 78bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 106bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 39spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 13spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 24spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 7spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 8spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 5spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 110spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 4peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 35spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 3lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 3lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 9bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 1bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 2bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 66peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 4peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 3bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000237 5thymus GEO : GSM539856
ER0000000238 4spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 6spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 65spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 1lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000244 45spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 1lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 25lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 4 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 2 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 472heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 1427brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 680lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 102liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 2014kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 824pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 540skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 191skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 640salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 33testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 870ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 21spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 118lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).