Deep sequencing reads for stem-loop sequence MI0001135

Stem-loop ID

osa-MIR171d

Reads

           osa-miR171d-5p                                                                              osa-miR171d-3p                    Count     RPM (mean number of reads per million)
............UGUUGGCCCGGCUCACUCAGA......................................................................................................  42        9.99
.............GUUGGCCCGGCUCACUCAGA......................................................................................................  20        4.81
..................CCCGGCUCACUCAGAUGGAUC................................................................................................  1         11.8
.................................................................................................GAACUUCUGAUUGAGCCGUGCC................  22        5.29
......................................................................................................UCUGAUUGAGCCGUGCCAAUA............  21        4.95
.......................................................................................................CUGAUUGAGCCGUGCCAAUAUC..........  23        17.1
........................................................................................................UGAUUGAGCCGUGCCAAUAUC..........  1474      1.9e+04
........................................................................................................UGAUUGAGCCGUGCCAAUA............  38        9.04
........................................................................................................UGAUUGAGCCGUGCCAAUAU...........  22        31.6
........................................................................................................UGAUUGAGCCGUGCCAAU.............  18        4.24
.........................................................................................................GAUUGAGCCGUGCCAAUAUC..........  41        21.4
UUGUAGCUAUGAUGUUGGCCCGGCUCACUCAGAUGGAUCAUCGGUGCAGAAGAGUGCAUGAAUCUGAUGCAGUCUCAGUGUAGUAUGCUCCAUGCUGGAACUUCUGAUUGAGCCGUGCCAAUAUCUCAGCACCAU
.....(((..(((((((((.(((((((.(((((((((.(((.(.((((..(((.(((((.......))))).)))...)))).)))).))))..........))))).))))))).)))))))))..)))..... (-56.20)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000008	661	whole body	GEO : GSM407071		[ Johnson C et al.]
ER0000000009	824	whole body	GEO : GSM407072		[ Johnson C et al.]
ER0000000201	476	whole body	GEO : GSM571077	strain: indica 93-11, age: 12-day-old, stress: control	[ Li T et al.]
ER0000000202	643	whole body	GEO : GSM571078	strain: indica 93-11, stress: H2O2	[ Li T et al.]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).