Deep sequencing reads for stem-loop sequence MI0001135

Stem-loop ID osa-MIR171d
Reads
           osa-miR171d-5p                                                                              osa-miR171d-3p                    Count     RPM (mean number of reads per million)
............UGUUGGCCCGGCUCACUCAGA......................................................................................................  42        9.99
.............GUUGGCCCGGCUCACUCAGA......................................................................................................  20        4.81
..................CCCGGCUCACUCAGAUGGAUC................................................................................................  1         11.8
.................................................................................................GAACUUCUGAUUGAGCCGUGCC................  22        5.29
......................................................................................................UCUGAUUGAGCCGUGCCAAUA............  21        4.95
.......................................................................................................CUGAUUGAGCCGUGCCAAUAUC..........  23        17.1
........................................................................................................UGAUUGAGCCGUGCCAAUAUC..........  1474      1.9e+04
........................................................................................................UGAUUGAGCCGUGCCAAUA............  38        9.04
........................................................................................................UGAUUGAGCCGUGCCAAUAU...........  22        31.6
........................................................................................................UGAUUGAGCCGUGCCAAU.............  18        4.24
.........................................................................................................GAUUGAGCCGUGCCAAUAUC..........  41        21.4
UUGUAGCUAUGAUGUUGGCCCGGCUCACUCAGAUGGAUCAUCGGUGCAGAAGAGUGCAUGAAUCUGAUGCAGUCUCAGUGUAGUAUGCUCCAUGCUGGAACUUCUGAUUGAGCCGUGCCAAUAUCUCAGCACCAU
.....(((..(((((((((.(((((((.(((((((((.(((.(.((((..(((.(((((.......))))).)))...)))).)))).))))..........))))).))))))).)))))))))..)))..... (-56.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000008 661whole body GEO : GSM407071 [ Johnson C et al.]
ER0000000009 824whole body GEO : GSM407072 [ Johnson C et al.]
ER0000000201 476whole body GEO : GSM571077 strain: indica 93-11, age: 12-day-old, stress: control [ Li T et al.]
ER0000000202 643whole body GEO : GSM571078 strain: indica 93-11, stress: H2O2 [ Li T et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2