Deep sequencing reads for stem-loop sequence MI0001071

Stem-loop ID

ath-MIR402

Reads

                                                                      ath-miR402                                                                                                                                                                                                                                       Count     RPM (mean number of reads per million)
.................................................................AUUCGAGGCCUAUUAAACCUCU..............................................................................................................................................................................................................................  2         20.2
..................................................................UUCGAGGCCUAUUAAACCUCUG.............................................................................................................................................................................................................................  14        56.7
..................................................................UUCGAGGCCUAUUAAACC.................................................................................................................................................................................................................................  3         11.4
..................................................................UUCGAGGCCUAUUAAACCUCUGUUA..........................................................................................................................................................................................................................  2         12.1
...................................................................UCGAGGCCUAUUAAACCUCUG.............................................................................................................................................................................................................................  1         4.15
.................................................................................................................................................................................................................................................AUAGGGGUUUAUAGACCUCGAAUC............................................  2         8.3
..................................................................................................................................................................................................................................................UAGGGGUUUAUAGACCUCGAA..............................................  3         11.5
CGUGGUAGAUAAGUUUGAGUUGCAUAGUGGCAGUCUUCCUUUGUUUGUUAACCCAUAUUUUCAUGAUUCGAGGCCUAUUAAACCUCUGUUACAUCUGCUUUUUGAAAAGUUGUCAUUUUUCUGAAAUCUUCUUGCCUCAAUUUCCAACAGCAGAUUCAUCUUUCAUUGGAUGAUCCGUUAGUUUUUGAUAGAAAAAAUGAGGUGGGAAGAAAUUAAGACUGACUUCGAAAUAGCCUUUAAAAUAGGGGUUUAUAGACCUCGAAUCAUAUCAAACGAGUCUGCUACUAUGCUACUGAAAACUUUAUCAAA
.......(((((((((.(((.((((((((((((.(((.....(((((...............(((((((((((.((((.(((((((((((......((((((((((.((((.(((......)))..((((((..(((((.(((((((.(((.(((((((((......))))))...))).))).)))...))))...)))))..))))))......))))...))))))).)))......))))))))))))))).)))))))))))..)))))))).)))))))))))).)))..)))).)))))... (-105.13)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	3	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	2	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000208	4	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	2	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	9	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	7	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).