Deep sequencing reads for stem-loop sequence MI0001018

Stem-loop ID

ath-MIR398b

Reads

                                                                                       ath-miR398b                   Count     RPM (mean number of reads per million)
......UCGACAGGGUUGAUAUGAGAA.........................................................................................  3         8.13
.........ACAGGGUUGAUAUGAGAACAC......................................................................................  5         38.7
..........CAGGGUUGAUAUGAGAACACACG...................................................................................  1         5.89
..........CAGGGUUGAUAUGAGAACAC......................................................................................  1         7.59
...........AGGGUUGAUAUGAGAACACAC....................................................................................  305       2.24e+03
...........AGGGUUGAUAUGAGAACAC......................................................................................  1         7.59
...........AGGGUUGAUAUGAGAACACACGAG.................................................................................  1         5.89
............GGGUUGAUAUGAGAACACACG...................................................................................  123       409
............GGGUUGAUAUGAGAACACAC....................................................................................  28        212
............GGGUUGAUAUGAGAACA.......................................................................................  2         5.98
............GGGUUGAUAUGAGAACACACGAG.................................................................................  1         3.11
............GGGUUGAUAUGAGAACACACGA..................................................................................  1         5.89
............GGGUUGAUAUGAGAACACA.....................................................................................  1         5.89
.............GGUUGAUAUGAGAACACACG...................................................................................  2         5.98
..................................................................................UCAUGUGUUCUCAGGUCACCCCUG..........  2         5.42
...................................................................................CAUGUGUUCUCAGGUCACCCCUG..........  5         12.1
....................................................................................AUGUGUUCUCAGGUCACCCCUG..........  63        45.9
....................................................................................AUGUGUUCUCAGGUCACCCCU...........  6         33.2
.....................................................................................UGUGUUCUCAGGUCACCCCUG..........  46317     1.79e+04
.....................................................................................UGUGUUCUCAGGUCACCCCU...........  1185      349
.....................................................................................UGUGUUCUCAGGUCACCCCUGC.........  74        30.7
.....................................................................................UGUGUUCUCAGGUCACCCC............  50        7.13
.....................................................................................UGUGUUCUCAGGUCACCC.............  3         8.29
.....................................................................................UGUGUUCUCAGGUCACC..............  3         8.13
.....................................................................................UGUGUUCUCAGGUCACCCCUGCU........  2         0.181
.....................................................................................UGUGUUCUCAGGUCACCCCUGCUG.......  1         0.0903
......................................................................................GUGUUCUCAGGUCACCCCUG..........  193       491
......................................................................................GUGUUCUCAGGUCACCCCUGC.........  14        38.8
.......................................................................................UGUUCUCAGGUCACCCCUG..........  61        16.8
.......................................................................................UGUUCUCAGGUCACCCCUGCU........  11        0.993
UGGAUCUCGACAGGGUUGAUAUGAGAACACACGAGUAAUCAACGGCUGUAAUGACGCUACGUCAUUGUUACAGCUCUCGUUUUCAUGUGUUCUCAGGUCACCCCUGCUGAGCUCUU
.(((.((((.(((((.((((.((((((((((.(((.(((....(((((((((((((...))))))...)))))))...)))))).)))))))))).)))).))))).)))).))). (-51.50)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	110131	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	343	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	56	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	262	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	58	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	2359	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	318	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	1479	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).