Deep sequencing reads for stem-loop sequence MI0001017

Stem-loop ID

ath-MIR398a

Reads

                                                                            ath-miR398a                   Count     RPM (mean number of reads per million)
........CAAAGGAGUGGCAUGUGAACA............................................................................  1         11.8
.........AAAGGAGUGGCAUGUGAACACA..........................................................................  2         15.2
..........AAGGAGUGGCAUGUGAACACA..........................................................................  3068      2.16e+04
..........AAGGAGUGGCAUGUGAACAC...........................................................................  7         48
..........AAGGAGUGGCAUGUGAACA............................................................................  6         40.4
..........AAGGAGUGGCAUGUGAACACAU.........................................................................  1         5.89
...........AGGAGUGGCAUGUGAACACA..........................................................................  57        415
...........AGGAGUGGCAUGUGAACACAUA........................................................................  4         23.6
...........AGGAGUGGCAUGUGAACACAUAUC......................................................................  2         11.8
...........AGGAGUGGCAUGUGAACACAU.........................................................................  2         11.8
............GGAGUGGCAUGUGAACACAUA........................................................................  142       448
............GGAGUGGCAUGUGAACACA..........................................................................  5         26.4
.............GAGUGGCAUGUGAACACAUA........................................................................  1         11.8
..............AGUGGCAUGUGAACACAUAUC......................................................................  3         11.9
......................................................................GUUUUGUGUUCUCAGGUCACCCC............  1         5.89
......................................................................GUUUUGUGUUCUCAGGUCACCCCUU..........  1         5.89
.......................................................................UUUUGUGUUCUCAGGUCACCC.............  4         30.4
.......................................................................UUUUGUGUUCUCAGGUCACCCCU...........  1         0.0903
.......................................................................UUUUGUGUUCUCAGGUCACC..............  1         0.0903
........................................................................UUUGUGUUCUCAGGUCACCCC............  71        30
........................................................................UUUGUGUUCUCAGGUCACCCCU...........  19        1.72
........................................................................UUUGUGUUCUCAGGUCACCCCUU..........  8         0.722
.........................................................................UUGUGUUCUCAGGUCACCCCU...........  696       110
.........................................................................UUGUGUUCUCAGGUCACCCCUU..........  75        6.77
.........................................................................UUGUGUUCUCAGGUCACCCC............  6         15.5
.........................................................................UUGUGUUCUCAGGUCACCC.............  6         0.542
..........................................................................UGUGUUCUCAGGUCACCCCUU..........  65323     6.12e+03
..........................................................................UGUGUUCUCAGGUCACCCCU...........  1185      349
..........................................................................UGUGUUCUCAGGUCACCCCUUU.........  273       24.6
..........................................................................UGUGUUCUCAGGUCACCCC............  50        7.13
..........................................................................UGUGUUCUCAGGUCACCC.............  3         8.29
..........................................................................UGUGUUCUCAGGUCACC..............  3         8.13
...........................................................................GUGUUCUCAGGUCACCCCUU..........  131       11.8
...........................................................................GUGUUCUCAGGUCACCCCUUU.........  4         0.361
............................................................................UGUUCUCAGGUCACCCCUUUG........  43        6.66
............................................................................UGUUCUCAGGUCACCCCUU..........  26        2.35
UGAAAUUUCAAAGGAGUGGCAUGUGAACACAUAUCCUAUGGUUUCUUCAAAUUUCCAUUGAAACCAUUGAGUUUUGUGUUCUCAGGUCACCCCUUUGAAUCUCCC
......((((((((.(((((.((.(((((((..((..((((((((..............)))))))).))....))))))).)).))))).))))))))...... (-39.84)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	110258	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	2183	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	1060	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	263	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	46	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	2349	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	374	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	1426	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).