Deep sequencing reads for stem-loop sequence MI0000985

Stem-loop ID

ath-MIR169k

Reads

                                            ath-miR169k                                                                                                                                                               Count     RPM (mean number of reads per million)
........................................GGUAGCCAAGGAUGACUUGCCUG......................................................................................................................................................  33        101
........................................GGUAGCCAAGGAUGACUUGCCU.......................................................................................................................................................  10        28.7
........................................GGUAGCCAAGGAUGACUUGCC........................................................................................................................................................  5         14.3
.........................................GUAGCCAAGGAUGACUUGCCUG......................................................................................................................................................  3         7.77
.........................................GUAGCCAAGGAUGACUUGCC........................................................................................................................................................  1         6.19
..........................................UAGCCAAGGAUGACUUGCCUG......................................................................................................................................................  1048      2.22e+03
..........................................UAGCCAAGGAUGACUUGCCUGC.....................................................................................................................................................  36        40.3
..........................................UAGCCAAGGAUGACUUGCCU.......................................................................................................................................................  11        6.79
..........................................UAGCCAAGGAUGACUUGCC........................................................................................................................................................  7         0.632
...........................................AGCCAAGGAUGACUUGCCUG......................................................................................................................................................  2         9.06
...........................................AGCCAAGGAUGACUUGCCUGCU....................................................................................................................................................  1         2.87
...........................................AGCCAAGGAUGACUUGCC........................................................................................................................................................  1         2.87
............................................GCCAAGGAUGACUUGCC........................................................................................................................................................  2         9.06
.....................................................................................................................................................CAGGCAGUCUCCUUGGCUAUC...........................................  1         2.87
......................................................................................................................................................AGGCAGUCUCCUUGGCUAUC...........................................  3         8.6
.......................................................................................................................................................GGCAGUCUCCUUGGCUAUC...........................................  10        28.7
.........................................................................................................................................................CAGUCUCCUUGGCUAUCCU.........................................  3         8.6
UUAGAAGGAGAUGUCAAAGAUGAAUAGGAGAACAAUAUUUGGUAGCCAAGGAUGACUUGCCUGCUUCUCUGAACAAAAUGGUCGAUGUCAUGUUUUGAAGUGACUAUAAGUUAUACCAAGAAAUGACCAUUUUGUUUAUAAAUAGACAUCAGGCAGUCUCCUUGGCUAUCCUUAUAUGUUCUUCUUUCUCAACUCAGAUAUUUACCUUCAUCC
...((((((((((((..((.(((..(((((((((.(((..((((((((((((.((((.(((((..(((.(((((((((((((((........(((((..(((((.....)))))..)))))..))))))))))))))).....)))...))))))))))))))))))).))..))))))))))))...))).))..))))))).))))).... (-86.80)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	1134	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	1	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	3	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	14	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	130	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	172	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	651	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	47	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).