Deep sequencing reads for stem-loop sequence MI0000976

Stem-loop ID

ath-MIR169b

Reads

                                            ath-miR169b                                                                                                                               Count     RPM (mean number of reads per million)
....................UGAAGUGGAGUAGAGUAUAAUG...........................................................................................................................................  1         2.87
......................................AAUGCAGCCAAGGAUGACUUGCC........................................................................................................................  3         0.271
.......................................AUGCAGCCAAGGAUGACUUGCC........................................................................................................................  2         0.181
........................................UGCAGCCAAGGAUGACUUGCC........................................................................................................................  436       666
........................................UGCAGCCAAGGAUGACUUGC.........................................................................................................................  4         12
.........................................GCAGCCAAGGAUGACUUGCCG.......................................................................................................................  1         0.0903
..........................................CAGCCAAGGAUGACUUGCCGG......................................................................................................................  342       346
..........................................CAGCCAAGGAUGACUUGCCG.......................................................................................................................  90        53.7
..........................................CAGCCAAGGAUGACUUGCC........................................................................................................................  25        16.1
..........................................CAGCCAAGGAUGACUUGCCGGAA....................................................................................................................  1         2.87
..........................................CAGCCAAGGAUGACUUGCCGGA.....................................................................................................................  1         2.71
...........................................AGCCAAGGAUGACUUGCCGG......................................................................................................................  11        20.4
...........................................AGCCAAGGAUGACUUGCCG.......................................................................................................................  1         2.87
...........................................AGCCAAGGAUGACUUGCC........................................................................................................................  1         2.87
............................................GCCAAGGAUGACUUGCCGG......................................................................................................................  27        8.54
............................................GCCAAGGAUGACUUGCC........................................................................................................................  2         9.06
............................................GCCAAGGAUGACUUGCCGGA.....................................................................................................................  1         2.87
.............................................CCAAGGAUGACUUGCCGGAAC...................................................................................................................  1         2.87
..........................................................................................................................UGGCAAGUUGUCCUUCGGCUAC.....................................  16        63.7
..........................................................................................................................UGGCAAGUUGUCCUUCGGCUACA....................................  2         2.96
...........................................................................................................................GGCAAGUUGUCCUUCGGCUACA....................................  67        209
...........................................................................................................................GGCAAGUUGUCCUUCGGCUAC.....................................  66        192
...........................................................................................................................GGCAAGUUGUCCUUCGGCUA......................................  2         5.74
...........................................................................................................................GGCAAGUUGUCCUUCGGC........................................  1         2.87
...........................................................................................................................GGCAAGUUGUCCUUCGGCU.......................................  1         2.87
CCCAACGGAGUAGAAUUGCAUGAAGUGGAGUAGAGUAUAAUGCAGCCAAGGAUGACUUGCCGGAACGUUGUUAACCAUGCAUAUGAAUAAUGUGAUGAUUAAUUAUGUGAUGAACAUAUUUCUGGCAAGUUGUCCUUCGGCUACAUUUUGCUCUCUUCUUCUCAUGCAAACUUUCCUUGGG
(((((.((((.((..((((((((...((((.((((((.((((.(((((((((..(((((((((((...((((...(((.(((((((.((((......)))).))))))))))))))...)))))))))))..))))).)))).)))).))))))))))...)))))))).))))))))))) (-82.30)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	4146	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	1	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	7	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	23	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	169	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	408	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	1483	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	140	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).