Deep sequencing reads for stem-loop sequence MI0000797

Stem-loop ID mmu-mir-380
Reads 
   mmu-miR-380-5p                      mmu-miR-380-3p           Count     RPM (mean number of reads per million)
...AUGGUUGACCAUAGAACAUGCG....................................  3155      51.9
...AUGGUUGACCAUAGAACAUGC.....................................  472       6.09
...AUGGUUGACCAUAGAACAUGCGC...................................  59        0.941
...AUGGUUGACCAUAGAACAUG......................................  18        0.469
...AUGGUUGACCAUAGAACAU.......................................  7         0.0269
...AUGGUUGACCAUAGAACAUGCGCUA.................................  3         0.0215
...AUGGUUGACCAUAGAACAUGCGCU..................................  1         0.0075
...AUGGUUGACCAUAGAACA........................................  1         0.102
....UGGUUGACCAUAGAACAUGCG....................................  8         0.0838
....UGGUUGACCAUAGAACAUGCGCU..................................  5         0.0426
....UGGUUGACCAUAGAACAUGCGC...................................  2         0.0204
....UGGUUGACCAUAGAACAUGC.....................................  1         0.00359
.....GGUUGACCAUAGAACAUGCG....................................  3         0.0775
.....GGUUGACCAUAGAACAUGCGCU..................................  2         0.0898
.....GGUUGACCAUAGAACAUGC.....................................  1         0.0051
......GUUGACCAUAGAACAUGCG....................................  5         0.0316
.......UUGACCAUAGAACAUGCGCUACUU..............................  11        0.181
.......UUGACCAUAGAACAUGCGCUAC................................  6         0.0672
.......UUGACCAUAGAACAUGCGCUACU...............................  6         0.0551
.......UUGACCAUAGAACAUGCG....................................  4         0.0472
.......UUGACCAUAGAACAUGCGCUACUUC.............................  3         0.0812
.......UUGACCAUAGAACAUGCGCUACUUCUGU..........................  1         0.00165
.......UUGACCAUAGAACAUGCGCUACUUCU............................  1         0.00165
.......UUGACCAUAGAACAUGCGCUACUUCUG...........................  1         0.00165
........UGACCAUAGAACAUGCG....................................  3         0.0331
........UGACCAUAGAACAUGCGCUACUU..............................  1         0.0117
........UGACCAUAGAACAUGCGCUACUUCU............................  1         0.00319
...........CCAUAGAACAUGCGCUACUUCUGU..........................  2         0.0378
............CAUAGAACAUGCGCUACUUCUGUG.........................  1         0.015
..............................UCUGUGUCGUAUGUAGUAUGGUC........  1         0.0145
................................UGUGUCGUAUGUAGUAUGGUCCAC.....  1         0.00359
................................UGUGUCGUAUGUAGUAUGG..........  1         0.0117
......................................GUAUGUAGUAUGGUCCACAUCU.  2         0.00811
.......................................UAUGUAGUAUGGUCCACAUCU.  20770     402
.......................................UAUGUAGUAUGGUCCACAUCUU  910       15.4
.......................................UAUGUAGUAUGGUCCACAUC..  564       11.7
.......................................UAUGUAGUAUGGUCCAC.....  156       3.03
.......................................UAUGUAGUAUGGUCCACAU...  120       2.23
.......................................UAUGUAGUAUGGUCCACA....  50        2.43
........................................AUGUAGUAUGGUCCACAUCU.  98        0.823
........................................AUGUAGUAUGGUCCACAUCUU  3         0.0108
........................................AUGUAGUAUGGUCCACAUC..  1         0.0166
.........................................UGUAGUAUGGUCCACAUCU.  39        0.431
.........................................UGUAGUAUGGUCCACAUC..  1         0.00359
..........................................GUAGUAUGGUCCACAUCU.  6         0.0606
...........................................UAGUAUGGUCCACAUCU.  50        1.14
AAGAUGGUUGACCAUAGAACAUGCGCUACUUCUGUGUCGUAUGUAGUAUGGUCCACAUCUU
((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))) (-27.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 2ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 2ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000033 6testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 1testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 2testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 146brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 384brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 798brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 111brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 2788brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 57whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 251whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 416whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 73whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 1244whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 1816whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 1868whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 1789whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 1657whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 1641whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 1472whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 6024whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 437embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1480embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 2473embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 329embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 34embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 51embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 99embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 8embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 9embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 23embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 45embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 2bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000222 1spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 4spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000230 1bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000235 93bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 5spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000244 232spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000246 2lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 764 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 610 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 292brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 2lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000254 11pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 49skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 18skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 9salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 1testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 6ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).