Deep sequencing reads for stem-loop sequence MI0000744

Stem-loop ID

hsa-mir-299

Reads

      hsa-miR-299-5p                  hsa-miR-299-3p              Count     RPM (mean number of reads per million)
...AAAUGGUUUACCGUCCCACAUACA....................................  38        319
...AAAUGGUUUACCGUCCCACAUACAU...................................  29        396
...AAAUGGUUUACCGUCCCACAUAC.....................................  17        130
...AAAUGGUUUACCGUCCCACAUA......................................  1         8.01
...AAAUGGUUUACCGUCCCA..........................................  1         7.84
...AAAUGGUUUACCGUCCCACAU.......................................  1         8.01
.....AUGGUUUACCGUCCCACAUACA....................................  16        0.443
.....AUGGUUUACCGUCCCACAUAC.....................................  4         0.111
......UGGUUUACCGUCCCACAUACAU...................................  47        1.3
......UGGUUUACCGUCCCACAUACA....................................  10        0.277
......UGGUUUACCGUCCCACAUAC.....................................  3         0.0831
.....................................GUAUGUGGGAUGGUAAACCGCU....  6         0.166
.....................................GUAUGUGGGAUGGUAAACCGC.....  4         0.204
......................................UAUGUGGGAUGGUAAACCGCUU...  28        0.869
......................................UAUGUGGGAUGGUAAACCGCU....  3         0.0831
......................................UAUGUGGGAUGGUAAACC.......  2         0.0554
AAGAAAUGGUUUACCGUCCCACAUACAUUUUGAAUAUGUAUGUGGGAUGGUAAACCGCUUCUU
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).))))) (-40.50)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000104	4	melanocyte	GEO : GSM458536		[ Stark MS et al.]
ER0000000105	134		GEO : GSM458537	cell line: primary giant congental nevus	[ Stark MS et al.]
ER0000000139	1		GEO : GSM532875	normal cervix	[ Witten D et al.]
ER0000000155	4		GEO : GSM532891	normal cervix	[ Witten D et al.]
ER0000000159	24		GEO : GSM532895	normal cervix	[ Witten D et al.]
ER0000000163	15		GEO : GSM532899	normal cervix	[ Witten D et al.]
ER0000000167	35		GEO : GSM532903	normal cervix	[ Witten D et al.]
ER0000000173	55		GEO : GSM532909	normal cervix	[ Witten D et al.]
ER0000000177	14		GEO : GSM532913	normal cervix	[ Witten D et al.]
ER0000000179	11		GEO : GSM532915	normal cervix	[ Witten D et al.]
ER0000000180	1	squamous cell	GEO : GSM532916		[ Witten D et al.]
ER0000000185	28		GEO : GSM532921	normal cervix	[ Witten D et al.]
ER0000000187	13		GEO : GSM532923	normal cervix	[ Witten D et al.]

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).