miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0000713
Stem-loop ID	mmu-mir-199a-2
Reads	mmu-miR-199a-5p mmu-miR-199a-3p Count RPM (mean number of reads per million) .....GCUUCAGGAGAUCCUGCUCCGUC.................................................................................. 1 0.0101 ............GAGAUCCUGCUCCGUCGC................................................................................ 2 0.427 .............................CCCCAGUGUUCAGACUACCUGUUC......................................................... 25 0.549 .............................CCCCAGUGUUCAGACUACCUGU........................................................... 1 0.0144 .............................CCCCAGUGUUCAGACUACCUGUU.......................................................... 1 0.104 .............................CCCCAGUGUUCAGACUACCUGUUCA........................................................ 1 0.044 ..............................CCCAGUGUUCAGACUACCUGUUC......................................................... 117719 1.95e+03 ..............................CCCAGUGUUCAGACUACCUGUU.......................................................... 13197 284 ..............................CCCAGUGUUCAGACUACCU............................................................. 8683 14.5 ..............................CCCAGUGUUCAGACUACCUGU........................................................... 3021 90.2 ..............................CCCAGUGUUCAGACUACCUGUUCA........................................................ 2303 45.1 ..............................CCCAGUGUUCAGACUACCUG............................................................ 1412 25.2 ..............................CCCAGUGUUCAGACUACC.............................................................. 385 3.95 ..............................CCCAGUGUUCAGACUAC............................................................... 78 1.26 ..............................CCCAGUGUUCAGACUACCUGUUCAG....................................................... 9 0.0828 ..............................CCCAGUGUUCAGACUACCUGUUCAGG...................................................... 2 0.0246 ...............................CCAGUGUUCAGACUACCUGUUC......................................................... 1032 13.9 ...............................CCAGUGUUCAGACUACCUGUU.......................................................... 101 2.55 ...............................CCAGUGUUCAGACUACCUGU........................................................... 22 0.602 ...............................CCAGUGUUCAGACUACCUGUUCA........................................................ 20 0.224 ...............................CCAGUGUUCAGACUACCUG............................................................ 12 0.318 ...............................CCAGUGUUCAGACUACC.............................................................. 2 0.0228 ...............................CCAGUGUUCAGACUACCU............................................................. 2 0.0246 ................................CAGUGUUCAGACUACCUGUUC......................................................... 834 9.85 ................................CAGUGUUCAGACUACCUGUU.......................................................... 91 1.16 ................................CAGUGUUCAGACUACCUGU........................................................... 37 0.612 ................................CAGUGUUCAGACUACCUGUUCA........................................................ 29 0.322 ................................CAGUGUUCAGACUACCUG............................................................ 2 0.0202 ................................CAGUGUUCAGACUACCUGUUCAGGAC.................................................... 1 0.0101 .................................AGUGUUCAGACUACCUGUUC......................................................... 711 8.01 .................................AGUGUUCAGACUACCUGUU.......................................................... 60 0.92 .................................AGUGUUCAGACUACCUGUUCA........................................................ 14 0.132 .................................AGUGUUCAGACUACCUGU........................................................... 9 0.205 .................................AGUGUUCAGACUACCUG............................................................ 6 0.0575 ..................................GUGUUCAGACUACCUGUUC......................................................... 108 1.53 ..................................GUGUUCAGACUACCUGUU.......................................................... 13 0.164 ..................................GUGUUCAGACUACCUGUUCA........................................................ 10 0.104 ..................................GUGUUCAGACUACCUGU........................................................... 2 0.013 ...................................UGUUCAGACUACCUGUUC......................................................... 123 1.43 ...................................UGUUCAGACUACCUGUU.......................................................... 19 0.326 ...................................UGUUCAGACUACCUGUUCA........................................................ 3 0.0254 ....................................GUUCAGACUACCUGUUC......................................................... 1916 22.3 ....................................GUUCAGACUACCUGUUCA........................................................ 50 0.43 .....................................UUCAGACUACCUGUUCA........................................................ 12 0.155 .....................................UUCAGACUACCUGUUCAGGACAA.................................................. 1 0.00952 .......................................CAGACUACCUGUUCAGGA..................................................... 1 0.0101 ....................................................CAGGACAAUGCCGUUGUA........................................ 5 0.0549 ....................................................CAGGACAAUGCCGUUGU......................................... 2 0.0224 ....................................................CAGGACAAUGCCGUUGUACAG..................................... 1 0.0267 .....................................................AGGACAAUGCCGUUGUA........................................ 1 0.0101 ...................................................................GUACAGUAGUCUGCACAUUGGUU.................... 2 0.00355 ...................................................................GUACAGUAGUCUGCACAUUGGU..................... 1 0.00221 ....................................................................UACAGUAGUCUGCACAUUGGUU.................... 133109 509 ....................................................................UACAGUAGUCUGCACAUUGGUUA................... 48823 172 ....................................................................UACAGUAGUCUGCACAUUGGU..................... 12316 72.3 ....................................................................UACAGUAGUCUGCACAUUGG...................... 3404 25.3 ....................................................................UACAGUAGUCUGCACAUUG....................... 2959 9.8 ....................................................................UACAGUAGUCUGCACAUUGGUUAG.................. 170 1.02 ....................................................................UACAGUAGUCUGCACAUU........................ 81 1.35 ....................................................................UACAGUAGUCUGCACAUUGGUUAGA................. 16 0.117 ....................................................................UACAGUAGUCUGCACAU......................... 5 0.0597 .....................................................................ACAGUAGUCUGCACAUUGGUUA................... 883432 3.84e+03 .....................................................................ACAGUAGUCUGCACAUUGGUU.................... 755431 3.78e+03 .....................................................................ACAGUAGUCUGCACAUUGGU..................... 53540 353 .....................................................................ACAGUAGUCUGCACAUUGG...................... 27192 172 .....................................................................ACAGUAGUCUGCACAUUGGUUAG.................. 2287 14.2 .....................................................................ACAGUAGUCUGCACAUU........................ 618 10.9 .....................................................................ACAGUAGUCUGCACAUUG....................... 553 11.2 .....................................................................ACAGUAGUCUGCACAUUGGUUAGA................. 390 5.04 .....................................................................ACAGUAGUCUGCACAUUGGUUAGAC................ 6 0.0337 ......................................................................CAGUAGUCUGCACAUUGGUUA................... 91512 442 ......................................................................CAGUAGUCUGCACAUUGGUU.................... 30318 228 ......................................................................CAGUAGUCUGCACAUUGGU..................... 2175 19.8 ......................................................................CAGUAGUCUGCACAUUGG...................... 1115 13 ......................................................................CAGUAGUCUGCACAUUGGUUAG.................. 296 2.2 ......................................................................CAGUAGUCUGCACAUUG....................... 31 0.455 ......................................................................CAGUAGUCUGCACAUUGGUUAGA................. 13 0.0651 .......................................................................AGUAGUCUGCACAUUGGUUA................... 2213 15.2 .......................................................................AGUAGUCUGCACAUUGGUU.................... 1595 10.8 .......................................................................AGUAGUCUGCACAUUGGU..................... 133 1.47 .......................................................................AGUAGUCUGCACAUUGG...................... 29 0.447 .......................................................................AGUAGUCUGCACAUUGGUUAG.................. 8 0.0797 .......................................................................AGUAGUCUGCACAUUGGUUAGA................. 3 0.034 ........................................................................GUAGUCUGCACAUUGGUUA................... 418 5.13 ........................................................................GUAGUCUGCACAUUGGUU.................... 284 3.01 ........................................................................GUAGUCUGCACAUUGGU..................... 26 0.321 ........................................................................GUAGUCUGCACAUUGGUUAG.................. 3 0.0148 .........................................................................UAGUCUGCACAUUGGUU.................... 69 0.857 .........................................................................UAGUCUGCACAUUGGUUA................... 30 0.353 ..........................................................................AGUCUGCACAUUGGUUA................... 1052 11.6 ..........................................................................AGUCUGCACAUUGGUUAG.................. 5 0.0782 ............................................................................UCUGCACAUUGGUUAGA................. 3 0.0227 ...........................................................................................GACUGGGCAAGGGCCAGCA 2 0.00763 UGGAAGCUUCAGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGCCAGCA .....(((...((...((((((((.(((...(((((((.((((((((.(((...((......)).....))))))))))).)))))))...))).)))).))))))))). (-43.40)

                             mmu-miR-199a-5p                       mmu-miR-199a-3p                              Count     RPM (mean number of reads per million)
.....GCUUCAGGAGAUCCUGCUCCGUC..................................................................................  1         0.0101
............GAGAUCCUGCUCCGUCGC................................................................................  2         0.427
.............................CCCCAGUGUUCAGACUACCUGUUC.........................................................  25        0.549
.............................CCCCAGUGUUCAGACUACCUGU...........................................................  1         0.0144
.............................CCCCAGUGUUCAGACUACCUGUU..........................................................  1         0.104
.............................CCCCAGUGUUCAGACUACCUGUUCA........................................................  1         0.044
..............................CCCAGUGUUCAGACUACCUGUUC.........................................................  117719    1.95e+03
..............................CCCAGUGUUCAGACUACCUGUU..........................................................  13197     284
..............................CCCAGUGUUCAGACUACCU.............................................................  8683      14.5
..............................CCCAGUGUUCAGACUACCUGU...........................................................  3021      90.2
..............................CCCAGUGUUCAGACUACCUGUUCA........................................................  2303      45.1
..............................CCCAGUGUUCAGACUACCUG............................................................  1412      25.2
..............................CCCAGUGUUCAGACUACC..............................................................  385       3.95
..............................CCCAGUGUUCAGACUAC...............................................................  78        1.26
..............................CCCAGUGUUCAGACUACCUGUUCAG.......................................................  9         0.0828
..............................CCCAGUGUUCAGACUACCUGUUCAGG......................................................  2         0.0246
...............................CCAGUGUUCAGACUACCUGUUC.........................................................  1032      13.9
...............................CCAGUGUUCAGACUACCUGUU..........................................................  101       2.55
...............................CCAGUGUUCAGACUACCUGU...........................................................  22        0.602
...............................CCAGUGUUCAGACUACCUGUUCA........................................................  20        0.224
...............................CCAGUGUUCAGACUACCUG............................................................  12        0.318
...............................CCAGUGUUCAGACUACC..............................................................  2         0.0228
...............................CCAGUGUUCAGACUACCU.............................................................  2         0.0246
................................CAGUGUUCAGACUACCUGUUC.........................................................  834       9.85
................................CAGUGUUCAGACUACCUGUU..........................................................  91        1.16
................................CAGUGUUCAGACUACCUGU...........................................................  37        0.612
................................CAGUGUUCAGACUACCUGUUCA........................................................  29        0.322
................................CAGUGUUCAGACUACCUG............................................................  2         0.0202
................................CAGUGUUCAGACUACCUGUUCAGGAC....................................................  1         0.0101
.................................AGUGUUCAGACUACCUGUUC.........................................................  711       8.01
.................................AGUGUUCAGACUACCUGUU..........................................................  60        0.92
.................................AGUGUUCAGACUACCUGUUCA........................................................  14        0.132
.................................AGUGUUCAGACUACCUGU...........................................................  9         0.205
.................................AGUGUUCAGACUACCUG............................................................  6         0.0575
..................................GUGUUCAGACUACCUGUUC.........................................................  108       1.53
..................................GUGUUCAGACUACCUGUU..........................................................  13        0.164
..................................GUGUUCAGACUACCUGUUCA........................................................  10        0.104
..................................GUGUUCAGACUACCUGU...........................................................  2         0.013
...................................UGUUCAGACUACCUGUUC.........................................................  123       1.43
...................................UGUUCAGACUACCUGUU..........................................................  19        0.326
...................................UGUUCAGACUACCUGUUCA........................................................  3         0.0254
....................................GUUCAGACUACCUGUUC.........................................................  1916      22.3
....................................GUUCAGACUACCUGUUCA........................................................  50        0.43
.....................................UUCAGACUACCUGUUCA........................................................  12        0.155
.....................................UUCAGACUACCUGUUCAGGACAA..................................................  1         0.00952
.......................................CAGACUACCUGUUCAGGA.....................................................  1         0.0101
....................................................CAGGACAAUGCCGUUGUA........................................  5         0.0549
....................................................CAGGACAAUGCCGUUGU.........................................  2         0.0224
....................................................CAGGACAAUGCCGUUGUACAG.....................................  1         0.0267
.....................................................AGGACAAUGCCGUUGUA........................................  1         0.0101
...................................................................GUACAGUAGUCUGCACAUUGGUU....................  2         0.00355
...................................................................GUACAGUAGUCUGCACAUUGGU.....................  1         0.00221
....................................................................UACAGUAGUCUGCACAUUGGUU....................  133109    509
....................................................................UACAGUAGUCUGCACAUUGGUUA...................  48823     172
....................................................................UACAGUAGUCUGCACAUUGGU.....................  12316     72.3
....................................................................UACAGUAGUCUGCACAUUGG......................  3404      25.3
....................................................................UACAGUAGUCUGCACAUUG.......................  2959      9.8
....................................................................UACAGUAGUCUGCACAUUGGUUAG..................  170       1.02
....................................................................UACAGUAGUCUGCACAUU........................  81        1.35
....................................................................UACAGUAGUCUGCACAUUGGUUAGA.................  16        0.117
....................................................................UACAGUAGUCUGCACAU.........................  5         0.0597
.....................................................................ACAGUAGUCUGCACAUUGGUUA...................  883432    3.84e+03
.....................................................................ACAGUAGUCUGCACAUUGGUU....................  755431    3.78e+03
.....................................................................ACAGUAGUCUGCACAUUGGU.....................  53540     353
.....................................................................ACAGUAGUCUGCACAUUGG......................  27192     172
.....................................................................ACAGUAGUCUGCACAUUGGUUAG..................  2287      14.2
.....................................................................ACAGUAGUCUGCACAUU........................  618       10.9
.....................................................................ACAGUAGUCUGCACAUUG.......................  553       11.2
.....................................................................ACAGUAGUCUGCACAUUGGUUAGA.................  390       5.04
.....................................................................ACAGUAGUCUGCACAUUGGUUAGAC................  6         0.0337
......................................................................CAGUAGUCUGCACAUUGGUUA...................  91512     442
......................................................................CAGUAGUCUGCACAUUGGUU....................  30318     228
......................................................................CAGUAGUCUGCACAUUGGU.....................  2175      19.8
......................................................................CAGUAGUCUGCACAUUGG......................  1115      13
......................................................................CAGUAGUCUGCACAUUGGUUAG..................  296       2.2
......................................................................CAGUAGUCUGCACAUUG.......................  31        0.455
......................................................................CAGUAGUCUGCACAUUGGUUAGA.................  13        0.0651
.......................................................................AGUAGUCUGCACAUUGGUUA...................  2213      15.2
.......................................................................AGUAGUCUGCACAUUGGUU....................  1595      10.8
.......................................................................AGUAGUCUGCACAUUGGU.....................  133       1.47
.......................................................................AGUAGUCUGCACAUUGG......................  29        0.447
.......................................................................AGUAGUCUGCACAUUGGUUAG..................  8         0.0797
.......................................................................AGUAGUCUGCACAUUGGUUAGA.................  3         0.034
........................................................................GUAGUCUGCACAUUGGUUA...................  418       5.13
........................................................................GUAGUCUGCACAUUGGUU....................  284       3.01
........................................................................GUAGUCUGCACAUUGGU.....................  26        0.321
........................................................................GUAGUCUGCACAUUGGUUAG..................  3         0.0148
.........................................................................UAGUCUGCACAUUGGUU....................  69        0.857
.........................................................................UAGUCUGCACAUUGGUUA...................  30        0.353
..........................................................................AGUCUGCACAUUGGUUA...................  1052      11.6
..........................................................................AGUCUGCACAUUGGUUAG..................  5         0.0782
............................................................................UCUGCACAUUGGUUAGA.................  3         0.0227
...........................................................................................GACUGGGCAAGGGCCAGCA  2         0.00763
UGGAAGCUUCAGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGCCAGCA
.....(((...((...((((((((.(((...(((((((.((((((((.(((...((......)).....))))))))))).)))))))...))).)))).))))))))). (-43.40)

miRBase

Deep sequencing reads for stem-loop sequence MI0000713

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).