Deep sequencing reads for stem-loop sequence MI0000687

Stem-loop ID mmu-mir-17
Reads 
              mmu-miR-17-5p                       mmu-miR-17-3p                       Count     RPM (mean number of reads per million)
............UCAAAGUGCUUACAGUGCAGGUAG................................................  662       8.89
............UCAAAGUGCUUACAGUGCAGGUA.................................................  522       5.69
............UCAAAGUGCUUACAGUGCAGGU..................................................  468       5.32
............UCAAAGUGCUUACAGUGCAGG...................................................  349       4.46
............UCAAAGUGCUUACAGUGCAGGUAGU...............................................  78        0.913
............UCAAAGUGCUUACAGUGCAG....................................................  62        0.516
............UCAAAGUGCUUACAGUGCA.....................................................  21        0.0843
............UCAAAGUGCUUACAGUGC......................................................  6         0.136
.............CAAAGUGCUUACAGUGCAGGUAG................................................  114439    1.78e+03
.............CAAAGUGCUUACAGUGCAGGUA.................................................  17626     196
.............CAAAGUGCUUACAGUGCAGGUAGU...............................................  15153     244
.............CAAAGUGCUUACAGUGCAGGU..................................................  7627      107
.............CAAAGUGCUUACAGUGCAGG...................................................  3953      42.9
.............CAAAGUGCUUACAGUGCAG....................................................  1700      11.5
.............CAAAGUGCUUACAGUGCA.....................................................  163       2.5
.............CAAAGUGCUUACAGUGC......................................................  159       3.04
.............CAAAGUGCUUACAGUGCAGGUAGUG..............................................  28        0.165
.............CAAAGUGCUUACAGUGCAGGUAGUGA.............................................  7         0.128
..............AAAGUGCUUACAGUGCAGGUAG................................................  1111      24.5
..............AAAGUGCUUACAGUGCAGGUAGU...............................................  224       4.11
..............AAAGUGCUUACAGUGCAGGUA.................................................  155       1.8
..............AAAGUGCUUACAGUGCAGGU..................................................  112       1.72
..............AAAGUGCUUACAGUGCAGG...................................................  28        0.38
..............AAAGUGCUUACAGUGCA.....................................................  6         0.052
..............AAAGUGCUUACAGUGCAG....................................................  4         0.0493
...............AAGUGCUUACAGUGCAGGUAG................................................  75        1.18
...............AAGUGCUUACAGUGCAGGUA.................................................  11        0.441
...............AAGUGCUUACAGUGCAGGUAGU...............................................  9         0.0839
...............AAGUGCUUACAGUGCAGGU..................................................  3         0.0197
...............AAGUGCUUACAGUGCAGG...................................................  3         0.0895
...............AAGUGCUUACAGUGCAG....................................................  2         0.0202
................AGUGCUUACAGUGCAGGUAG................................................  70        1.08
................AGUGCUUACAGUGCAGGUA.................................................  10        0.107
................AGUGCUUACAGUGCAGGUAGU...............................................  5         0.058
................AGUGCUUACAGUGCAGGU..................................................  2         0.0204
................AGUGCUUACAGUGCAGG...................................................  1         0.0118
.................GUGCUUACAGUGCAGGUAG................................................  201       5.68
.................GUGCUUACAGUGCAGGUAGU...............................................  43        0.547
.................GUGCUUACAGUGCAGGUA.................................................  15        0.143
.................GUGCUUACAGUGCAGGU..................................................  15        0.219
..................UGCUUACAGUGCAGGUAG................................................  550       11.2
..................UGCUUACAGUGCAGGUAGU...............................................  45        0.958
..................UGCUUACAGUGCAGGUA.................................................  31        0.654
...................GCUUACAGUGCAGGUAG................................................  486       9.32
...................GCUUACAGUGCAGGUAGU...............................................  108       2.12
....................CUUACAGUGCAGGUAGU...............................................  698       17.9
...............................................UCUACUGCAGUGAGGGCACUUGUAGC...........  1         0.0104
.................................................UACUGCAGUGAGGGCACUUGUAG............  8         0.101
.................................................UACUGCAGUGAGGGCACUU................  4         0.0134
.................................................UACUGCAGUGAGGGCACUUG...............  3         0.00878
.................................................UACUGCAGUGAGGGCACUUGU..............  2         0.00644
..................................................ACUGCAGUGAGGGCACUUGUAG............  19773     93.6
..................................................ACUGCAGUGAGGGCACUUGUAGC...........  6685      65.7
..................................................ACUGCAGUGAGGGCACUUGUA.............  6475      23.2
..................................................ACUGCAGUGAGGGCACUUGU..............  5778      19.9
..................................................ACUGCAGUGAGGGCACUUG...............  3577      11.8
..................................................ACUGCAGUGAGGGCACUUGUAGCA..........  1314      5.69
..................................................ACUGCAGUGAGGGCACUU................  789       2.5
..................................................ACUGCAGUGAGGGCACUUGUAGCAU.........  171       0.906
..................................................ACUGCAGUGAGGGCACUUGUAGCAUU........  42        0.129
..................................................ACUGCAGUGAGGGCACUUGUAGCAUUA.......  1         0.00383
...................................................CUGCAGUGAGGGCACUUGUAG............  832       3.4
...................................................CUGCAGUGAGGGCACUUGUAGC...........  518       4.98
...................................................CUGCAGUGAGGGCACUUGUAGCA..........  426       1.9
...................................................CUGCAGUGAGGGCACUUGUA.............  232       0.783
...................................................CUGCAGUGAGGGCACUUGU..............  156       0.483
...................................................CUGCAGUGAGGGCACUUG...............  84        0.287
...................................................CUGCAGUGAGGGCACUUGUAGCAU.........  25        0.114
...................................................CUGCAGUGAGGGCACUUGUAGCAUU........  3         0.00977
....................................................UGCAGUGAGGGCACUUGUAG............  371       1.62
....................................................UGCAGUGAGGGCACUUGUA.............  118       0.415
....................................................UGCAGUGAGGGCACUUGUAGCA..........  24        0.108
....................................................UGCAGUGAGGGCACUUGUAGC...........  22        0.246
....................................................UGCAGUGAGGGCACUUGUAGCAU.........  4         0.0249
.....................................................GCAGUGAGGGCACUUGUAG............  72        0.351
.....................................................GCAGUGAGGGCACUUGUAGCA..........  9         0.0352
.....................................................GCAGUGAGGGCACUUGUAGC...........  4         0.0885
......................................................CAGUGAGGGCACUUGUAGCA..........  4         0.0077
......................................................CAGUGAGGGCACUUGUAGC...........  1         0.00383
.......................................................AGUGAGGGCACUUGUAG............  38        0.592
.......................................................AGUGAGGGCACUUGUAGC...........  33        0.407
.......................................................AGUGAGGGCACUUGUAGCA..........  2         0.0126
.......................................................AGUGAGGGCACUUGUAGCAU.........  1         0.0101
........................................................GUGAGGGCACUUGUAGC...........  122       1.84
........................................................GUGAGGGCACUUGUAGCA..........  7         0.049
........................................................GUGAGGGCACUUGUAGCAU.........  2         0.0129
GUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUGUGUGCAUCUACUGCAGUGAGGGCACUUGUAGCAUUAUGCUGAC
(((((.(((((((..(((((((..((.(((((.....((((....))))..))))).))..)))))))...))))))).))))) (-39.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 3ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 539ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 410ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 36ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 138testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 707testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 910testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 89testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 108brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 645brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 812brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 101brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 3105brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 123whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 1165whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 1109whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 178whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 2540whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 3831whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 4567whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 4691whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 4869whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 4957whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 4490whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 19332whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 5657embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 34694embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 38796embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 4098embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1735embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 6523embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 6478embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 473embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 2389embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 6836embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 7854embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 3496bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 2510bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 1535spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1544spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 2815spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 4023spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 4107spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 3140spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 4639spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1250peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1034spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1644lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 349lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 3447bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 436bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 1377bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 1911peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 270peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 939bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 436bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 1285spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 1439thymus GEO : GSM539856
ER0000000238 1057spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 1816spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 3549spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 3688lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 3663lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 2346lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 3350spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 2262lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 1542lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 5444 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 987 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 29heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 112brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 220lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 120liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 293kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 222pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 1003skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 446skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 569salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 131testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 384ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 1737spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 3340lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).