Deep sequencing reads for stem-loop sequence MI0000643

Stem-loop ID mmu-mir-351
Reads 
                mmu-miR-351-5p                          mmu-miR-351-3p                               Count     RPM (mean number of reads per million)
.............UUUCCCUGAGGAGCCCUUUGAGCCU.............................................................  2         0.0224
..............UUCCCUGAGGAGCCCUUUGAGCC..............................................................  1         0.0101
..............UUCCCUGAGGAGCCCUUUGAGC...............................................................  1         0.00285
..............UUCCCUGAGGAGCCCUUUGAGCCU.............................................................  1         0.0118
...............UCCCUGAGGAGCCCUUUGAGC...............................................................  6247      86
...............UCCCUGAGGAGCCCUUUGAGCCUG............................................................  5099      47.8
...............UCCCUGAGGAGCCCUUUGAGCCU.............................................................  4604      69.5
...............UCCCUGAGGAGCCCUUUGAGCC..............................................................  3934      52.3
...............UCCCUGAGGAGCCCUUUGAG................................................................  1720      25.9
...............UCCCUGAGGAGCCCUUUGA.................................................................  785       8.79
...............UCCCUGAGGAGCCCUUUGAGCCUGG...........................................................  49        0.381
...............UCCCUGAGGAGCCCUUUG..................................................................  20        1.46
...............UCCCUGAGGAGCCCUUUGAGCCUGGA..........................................................  5         0.0875
...............UCCCUGAGGAGCCCUUU...................................................................  2         0.0231
................CCCUGAGGAGCCCUUUGAGC...............................................................  9         0.0666
................CCCUGAGGAGCCCUUUGAGCCU.............................................................  5         0.108
................CCCUGAGGAGCCCUUUGAGCC..............................................................  2         0.0121
................CCCUGAGGAGCCCUUUGAGCCUGGA..........................................................  1         0.00257
.................CCUGAGGAGCCCUUUGAGC...............................................................  63        0.512
.................CCUGAGGAGCCCUUUGAGCCU.............................................................  50        0.479
.................CCUGAGGAGCCCUUUGAGCC..............................................................  34        0.347
.................CCUGAGGAGCCCUUUGAGCCUG............................................................  14        0.0648
.................CCUGAGGAGCCCUUUGAG................................................................  3         0.111
.................CCUGAGGAGCCCUUUGAGCCUGG...........................................................  3         0.0263
.................CCUGAGGAGCCCUUUGA.................................................................  2         0.0204
..................CUGAGGAGCCCUUUGAGC...............................................................  8         0.0543
..................CUGAGGAGCCCUUUGAGCC..............................................................  8         0.344
..................CUGAGGAGCCCUUUGAG................................................................  3         0.0295
..................CUGAGGAGCCCUUUGAGCCUG............................................................  1         0.0123
...................UGAGGAGCCCUUUGAGC...............................................................  11        0.156
...................UGAGGAGCCCUUUGAGCCU.............................................................  8         0.059
...................UGAGGAGCCCUUUGAGCC..............................................................  8         0.478
...................UGAGGAGCCCUUUGAGCCUG............................................................  4         0.0672
....................GAGGAGCCCUUUGAGCCU.............................................................  3         0.0223
....................GAGGAGCCCUUUGAGCCUG............................................................  1         0.0101
....................GAGGAGCCCUUUGAGCCUGG...........................................................  1         0.0123
....................GAGGAGCCCUUUGAGCC..............................................................  1         0.0127
.....................AGGAGCCCUUUGAGCCU.............................................................  104       1.43
......................GGAGCCCUUUGAGCCUG............................................................  3         0.0222
......................................GGAGUGAAAAAAAAAAACA..........................................  1         0.0104
......................................GGAGUGAAAAAAAAAAACAG.........................................  1         0.0118
.......................................GAGUGAAAAAAAAAAACA..........................................  115       2.3
.......................................GAGUGAAAAAAAAAAAC...........................................  6         0.0654
...................................................AAAACAGGUCAAGAGGCGCCUGG.........................  1         0.00257
...................................................AAAACAGGUCAAGAGGCGCCUGGGAA......................  1         0.0105
....................................................AAACAGGUCAAGAGGCGCCUGGGAA......................  3         0.022
....................................................AAACAGGUCAAGAGGCGCCUGGGAAC.....................  1         0.0101
.......................................................CAGGUCAAGAGGCGCCUGGGAA......................  1         0.0118
.......................................................CAGGUCAAGAGGCGCCUGGGAACU....................  1         0.0021
........................................................AGGUCAAGAGGCGCCUGGGAAC.....................  321       3.45
........................................................AGGUCAAGAGGCGCCUGGGAACU....................  116       1.95
........................................................AGGUCAAGAGGCGCCUGGGAA......................  19        0.291
........................................................AGGUCAAGAGGCGCCUGGGA.......................  8         0.0653
.........................................................GGUCAAGAGGCGCCUGGGAAC.....................  1593      16.2
.........................................................GGUCAAGAGGCGCCUGGGAACU....................  582       10.4
.........................................................GGUCAAGAGGCGCCUGGGAA......................  480       4.16
.........................................................GGUCAAGAGGCGCCUGGGA.......................  59        0.494
.........................................................GGUCAAGAGGCGCCUGG.........................  2         0.00514
.........................................................GGUCAAGAGGCGCCUGGG........................  2         0.00514
.........................................................GGUCAAGAGGCGCCUGGGAACUG...................  1         0.0038
..........................................................GUCAAGAGGCGCCUGGGAA......................  105       0.363
..........................................................GUCAAGAGGCGCCUGGGAAC.....................  83        0.793
..........................................................GUCAAGAGGCGCCUGGGAACU....................  74        1.04
..........................................................GUCAAGAGGCGCCUGGGA.......................  1         0.00257
...........................................................UCAAGAGGCGCCUGGGAAC.....................  1         0.0021
...........................................................UCAAGAGGCGCCUGGGA.......................  1         0.00257
...........................................................UCAAGAGGCGCCUGGGAACU....................  1         0.00952
............................................................CAAGAGGCGCCUGGGAACU....................  4         0.0293
............................................................CAAGAGGCGCCUGGGAAC.....................  1         0.0104
.............................................................AAGAGGCGCCUGGGAACU....................  10        0.158
.............................................................AAGAGGCGCCUGGGAAC.....................  9         0.0698
..............................................................................UGGAGAAGAGUGUUAAACU..  1         0.00257
CAUGGCACCUCCGUUUCCCUGAGGAGCCCUUUGAGCCUGGAGUGAAAAAAAAAAACAGGUCAAGAGGCGCCUGGGAACUGGAGAAGAGUGUUAAACUUC
..(((((((((((.(((((..(((.(((.(((((.((((................))))))))).))).)))))))).)))))....))))))...... (-37.79)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 5ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 458ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 300ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 32ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 9testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 44testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 35testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 5testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 9brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 45brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 68brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 7brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 180brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 76whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 714whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 657whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 100whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 1728whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 2368whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 2650whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 2501whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 2712whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 2618whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 2553whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 8234whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 161embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1147embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1224embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 134embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 328embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 1048embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1107embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 103embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 230embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 713embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 767embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 408bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 238bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 166spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 28spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 138spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 12spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 18spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 12spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 7spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 5peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 4lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 44lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 106bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 285bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 637bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 203peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 31peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 56bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 61bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 106spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 44thymus GEO : GSM539856
ER0000000238 9spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 28spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 9spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 56lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 122lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 138lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 2112spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 23lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 7lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 77 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 72 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 7heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 43brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 235lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 19liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 124kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 22pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 497skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 92skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 80salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 24testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 422ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 12spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 10lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).