Deep sequencing reads for stem-loop sequence MI0000563

Stem-loop ID mmu-let-7f-2
Reads 
        mmu-let-7f-5p                                  mmu-let-7f-2-3p               Count     RPM (mean number of reads per million)
...GGGAUGAGGUAGUAGAUUGUAUAGUU......................................................  3         0.0606
.....GAUGAGGUAGUAGAUUGUAUAGUU......................................................  8         0.0466
.....GAUGAGGUAGUAGAUUGUAUA.........................................................  4         0.0127
.....GAUGAGGUAGUAGAUUGUAUAGU.......................................................  1         0.066
.....GAUGAGGUAGUAGAUUGUAU..........................................................  1         0.00227
......AUGAGGUAGUAGAUUGUAUAGUU......................................................  2613      10.3
......AUGAGGUAGUAGAUUGUAUAGU.......................................................  778       2.52
......AUGAGGUAGUAGAUUGUAUAGUUU.....................................................  457       1.5
......AUGAGGUAGUAGAUUGUAUAG........................................................  163       0.67
......AUGAGGUAGUAGAUUGUAUA.........................................................  146       0.473
......AUGAGGUAGUAGAUUGUAU..........................................................  35        0.291
......AUGAGGUAGUAGAUUGUAUAGUUUU....................................................  12        0.0417
......AUGAGGUAGUAGAUUGUA...........................................................  8         0.0495
......AUGAGGUAGUAGAUUGUAUAGUUUUAG..................................................  1         0.00383
.......UGAGGUAGUAGAUUGUAUAGUU......................................................  32975332  1.1e+05
.......UGAGGUAGUAGAUUGUAUAGUUU.....................................................  5116363   1.67e+04
.......UGAGGUAGUAGAUUGUAUAGU.......................................................  4077011   1.34e+04
.......UGAGGUAGUAGAUUGUAUA.........................................................  1737939   5.45e+03
.......UGAGGUAGUAGAUUGUAUAGUUUU....................................................  891525    3.26e+03
.......UGAGGUAGUAGAUUGUAUAG........................................................  657965    2.29e+03
.......UGAGGUAGUAGAUUGUAU..........................................................  18099     289
.......UGAGGUAGUAGAUUGUAUAGUUUUA...................................................  6002      23.8
.......UGAGGUAGUAGAUUGUAUAGUUUUAG..................................................  5444      18.5
.......UGAGGUAGUAGAUUGUA...........................................................  1444      19.1
.......UGAGGUAGUAGAUUGUAUAGUUUUAGG.................................................  518       1.68
.......UGAGGUAGUAGAUUGUAUAGUUUUAGGGUC..............................................  6         0.0221
.......UGAGGUAGUAGAUUGUAUAGUUUUAGGGU...............................................  3         0.0115
.......UGAGGUAGUAGAUUGUAUAGUUUUAGGG................................................  1         0.00271
........GAGGUAGUAGAUUGUAUAGUU......................................................  53469     187
........GAGGUAGUAGAUUGUAUAGUUU.....................................................  7566      22.5
........GAGGUAGUAGAUUGUAUAGU.......................................................  7490      28.4
........GAGGUAGUAGAUUGUAUAG........................................................  1375      6.21
........GAGGUAGUAGAUUGUAUAGUUUU....................................................  695       2.24
........GAGGUAGUAGAUUGUAU..........................................................  262       2.84
........GAGGUAGUAGAUUGUAUA.........................................................  10        0.168
........GAGGUAGUAGAUUGUAUAGUUUUAG..................................................  10        0.0608
........GAGGUAGUAGAUUGUAUAGUUUUA...................................................  2         0.00499
.........AGGUAGUAGAUUGUAUAGUU......................................................  1754      6.84
.........AGGUAGUAGAUUGUAUAGUUU.....................................................  521       1.89
.........AGGUAGUAGAUUGUAUAGU.......................................................  254       0.925
.........AGGUAGUAGAUUGUAUAGUUUU....................................................  180       0.629
.........AGGUAGUAGAUUGUAUAG........................................................  28        0.109
.........AGGUAGUAGAUUGUAUAGUUUUA...................................................  3         0.0114
..........GGUAGUAGAUUGUAUAGUU......................................................  589       6.14
..........GGUAGUAGAUUGUAUAGUUU.....................................................  384       2.27
..........GGUAGUAGAUUGUAUAGU.......................................................  99        1.15
..........GGUAGUAGAUUGUAUAGUUUUA...................................................  48        0.146
..........GGUAGUAGAUUGUAUAGUUUU....................................................  19        0.0638
..........GGUAGUAGAUUGUAUAG........................................................  7         0.345
...........GUAGUAGAUUGUAUAGUU......................................................  263       2.41
...........GUAGUAGAUUGUAUAGUUU.....................................................  132       0.423
...........GUAGUAGAUUGUAUAGU.......................................................  17        0.0805
...........GUAGUAGAUUGUAUAGUUUUAG..................................................  6         0.0222
...........GUAGUAGAUUGUAUAGUUUU....................................................  2         0.0046
...........GUAGUAGAUUGUAUAGUUUUA...................................................  1         0.00465
............UAGUAGAUUGUAUAGUU......................................................  511       9.29
............UAGUAGAUUGUAUAGUUU.....................................................  20        0.0806
............UAGUAGAUUGUAUAGUUUU....................................................  3         0.0125
............UAGUAGAUUGUAUAGUUUUAGG.................................................  1         0.00326
............UAGUAGAUUGUAUAGUUUUAGGGU...............................................  1         0.00271
............UAGUAGAUUGUAUAGUUUUA...................................................  1         0.00221
.............AGUAGAUUGUAUAGUUU.....................................................  17        0.236
.............AGUAGAUUGUAUAGUUUUAGG.................................................  2         0.0301
.............AGUAGAUUGUAUAGUUUUAG..................................................  2         0.00601
.............AGUAGAUUGUAUAGUUUUA...................................................  2         0.00415
.............AGUAGAUUGUAUAGUUUU....................................................  1         0.0127
..............GUAGAUUGUAUAGUUUUAGG.................................................  2         0.00774
..............GUAGAUUGUAUAGUUUUAG..................................................  1         0.00267
...............UAGAUUGUAUAGUUUUAGG.................................................  9         0.0331
.............................UUAGGGUCAUACCCCAUCUUGGA...............................  85        0.636
.............................UUAGGGUCAUACCCCAUCUUGG................................  43        0.438
.............................UUAGGGUCAUACCCCAUCUUGGAG..............................  29        0.782
.............................UUAGGGUCAUACCCCAUCUUGGAGA.............................  13        0.224
.............................UUAGGGUCAUACCCCAUCUUGGAGAU............................  10        0.208
.............................UUAGGGUCAUACCCCAUCUUGGAGAUAA..........................  2         0.0057
.............................UUAGGGUCAUACCCCAUCU...................................  1         0.00105
.............................UUAGGGUCAUACCCCAUCUUGGAGAUA...........................  1         0.0104
...............................AGGGUCAUACCCCAUCUUGGAGAUAA..........................  1         0.0097
........................................CCCCAUCUUGGAGAUAA..........................  1         0.00975
....................................................GAUAACUAUACAGUCUACUGU..........  1         0.00847
.....................................................AUAACUAUACAGUCUACUGUCUUUC.....  1         0.00369
......................................................UAACUAUACAGUCUACUGUCUUUC.....  3         0.0847
......................................................UAACUAUACAGUCUACUGUCUUU......  1         0.0104
.......................................................AACUAUACAGUCUACUGUCUUUC.....  8         0.0917
.......................................................AACUAUACAGUCUACUGUCUU.......  1         0.00341
.......................................................AACUAUACAGUCUACUGUCUUU......  1         0.00369
.........................................................CUAUACAGUCUACUGUCUUUC.....  224       1.36
.........................................................CUAUACAGUCUACUGUCUUU......  43        0.42
.........................................................CUAUACAGUCUACUGUCUU.......  9         0.0686
.........................................................CUAUACAGUCUACUGUCUUUCC....  1         0.00227
.........................................................CUAUACAGUCUACUGUC.........  1         0.0104
..........................................................UAUACAGUCUACUGUCUUUC.....  3         0.0151
..........................................................UAUACAGUCUACUGUCUUU......  1         0.0101
.............................................................ACAGUCUACUGUCUUUC.....  1         0.00227
UGUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCACG
.((((((.(((..((((((((((((((((...(((.....))).(((.....)))))))))))))))))))..))))))))). (-40.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 51ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 3312ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 3443ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 345ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 1260testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 4998testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 6227testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 865testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 24780brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 87394brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 136043brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 18058brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 443836brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 2289whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 16463whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 19585whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 3775whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 61976whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 86006whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 98435whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 92242whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 94047whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 93976whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 86047whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 274025whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 3858embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 17628embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 24821embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 3245embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 36561embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 94500embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 119270embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 10215embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 26970embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 55385embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 75832embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 2524035bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 2270135bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 2305447spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1855261spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 1847146spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 2302007spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 1230182spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1082275spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1729165spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 2639384peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1760203spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1521112lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 585481lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 2014466bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 2687442bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 1990249bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 1265458peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 244156peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 1664524bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 1539476bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 1458251spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 1723761thymus GEO : GSM539856
ER0000000238 2607479spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 2785193spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 2657496spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 1519345lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 1869187lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 2259321lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 4331906spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 2692402lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 1804843lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 63073 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1622005 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 519082heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 3071503brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 3690494lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 884099liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 3042788kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 1844769pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 1997930skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 592783skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 2797239salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 97359testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 2315324ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 1116254spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 1485117lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).