Deep sequencing reads for stem-loop sequence MI0000466

Stem-loop ID hsa-mir-9-1
Reads 
                 hsa-miR-9-5p                          hsa-miR-9-3p                        Count     RPM (mean number of reads per million)
...............UCUUUGGUUAUCUAGCUGUAUGA...................................................  1833      46.8
...............UCUUUGGUUAUCUAGCUGUAUG....................................................  283       13
...............UCUUUGGUUAUCUAGCUGUA......................................................  53        1.75
...............UCUUUGGUUAUCUAGCUGUAU.....................................................  45        6.53
...............UCUUUGGUUAUCUAGCUGU.......................................................  9         5.92
...............UCUUUGGUUAUCUAGCUG........................................................  4         0.0904
................CUUUGGUUAUCUAGCUGUAUGA...................................................  10        0.289
.................UUUGGUUAUCUAGCUGUAUGA...................................................  15        0.342
.................UUUGGUUAUCUAGCUGUAUG....................................................  1         16.7
..................UUGGUUAUCUAGCUGUAUGA...................................................  5         0.131
......................................................AUAAAGCUAGAUAACCGAAAGUA............  84        2.17
......................................................AUAAAGCUAGAUAACCGAAAGU.............  42        8.97
......................................................AUAAAGCUAGAUAACCGAAAGUAA...........  2         0.0379
......................................................AUAAAGCUAGAUAACCGA.................  1         21.6
.......................................................UAAAGCUAGAUAACCGAAAGUA............  255       6.6
.......................................................UAAAGCUAGAUAACCGAAAGUAA...........  42        1.01
.......................................................UAAAGCUAGAUAACCGAAAGU.............  32        6.52
.......................................................UAAAGCUAGAUAACCGAAAG..............  2         0.0465
........................................................AAAGCUAGAUAACCGAAAGUA............  2         0.0379
CGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCA
.(((((((....(((..(((((((((((((((.((((((.((.......)))))))).)))))))))))))))..)))...))))))). (-42.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 4embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 3embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 6melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 64melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000106 12melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 117melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 903melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 413melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 962melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 97melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 96melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 248melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 214melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000136 9squamous cell GEO : GSM532872 [ Witten D et al.]
ER0000000142 2squamous cell GEO : GSM532878 [ Witten D et al.]
ER0000000150 7squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000154 1squamous cell GEO : GSM532890 [ Witten D et al.]
ER0000000155 5 GEO : GSM532891 normal cervix [ Witten D et al.]
ER0000000167 1 GEO : GSM532903 normal cervix [ Witten D et al.]
ER0000000173 1 GEO : GSM532909 normal cervix [ Witten D et al.]
ER0000000174 1squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000176 3adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000178 1squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000182 2squamous cell GEO : GSM532918 [ Witten D et al.]
ER0000000184 116squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000193 1 GEO : GSM532929 normal cervix [ Witten D et al.]
ER0000000262 5 GEO : GSM337570 antibody: anti-Ago1 4B8
ER0000000263 12 GEO : GSM337571 antibody: anti-Ago2 11A9
ER0000000264 1 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).