miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0000418
Stem-loop ID	dme-mir-307a
Reads	dme-miR-307a-5p dme-miR-307a-3p Count RPM (mean number of reads per million) ...........GACUCACUCAACCUGGGUGUGA....................................................... 164 4.77 ...........GACUCACUCAACCUGGGUGU......................................................... 48 0.864 ...........GACUCACUCAACCUGGGUGUG........................................................ 30 0.625 ...........GACUCACUCAACCUGGGUGUGAU...................................................... 1 0.0071 ...........GACUCACUCAACCUGGGU........................................................... 1 0.0828 ............ACUCACUCAACCUGGGUGUGAU...................................................... 5933 193 ............ACUCACUCAACCUGGGUGUGAUG..................................................... 890 37.5 ............ACUCACUCAACCUGGGUGU......................................................... 211 8.8 ............ACUCACUCAACCUGGGUGUG........................................................ 92 1.17 ............ACUCACUCAACCUGGGUGUGAUGU.................................................... 11 0.393 ............ACUCACUCAACCUGGGUG.......................................................... 3 0.124 .............CUCACUCAACCUGGGUGUGA....................................................... 30 0.721 .............CUCACUCAACCUGGGUGUGAU...................................................... 29 0.881 .............CUCACUCAACCUGGGUGUGAUG..................................................... 16 1.38 .............CUCACUCAACCUGGGUGUG........................................................ 1 0.0686 ..............UCACUCAACCUGGGUGUGAU...................................................... 25 0.462 ..............UCACUCAACCUGGGUGUGA....................................................... 4 0.624 ..............UCACUCAACCUGGGUGUG........................................................ 2 0.0159 ...............CACUCAACCUGGGUGUGAU...................................................... 4 0.0403 ...............CACUCAACCUGGGUGUGA....................................................... 2 0.0142 ................ACUCAACCUGGGUGUGAU...................................................... 10 2.27 ................ACUCAACCUGGGUGUGAUG..................................................... 5 2.58 .................CUCAACCUGGGUGUGAUGU.................................................... 1 0.832 .................CUCAACCUGGGUGUGAUG..................................................... 1 0.0723 .................................UGUUAUUUCGAUAUGGUAUCCAUC............................... 15 1.81 .................................UGUUAUUUCGAUAUGGUAU.................................... 1 0.0978 ..................................GUUAUUUCGAUAUGGUAUCCAU................................ 6 0.134 ..................................GUUAUUUCGAUAUGGUAUCC.................................. 1 0.0686 ...................................UUAUUUCGAUAUGGUAUCCA................................. 30 0.782 ...................................UUAUUUCGAUAUGGUAUCCAU................................ 1 0.019 ...................................UUAUUUCGAUAUGGUAUCC.................................. 1 0.0071 ....................................UAUUUCGAUAUGGUAUCCA................................. 1 0.0336 ......................................................AUCACAACCUCCUUGAGUGAGCG........... 18 0.203 ......................................................AUCACAACCUCCUUGAGUGAGCGA.......... 9 0.759 ......................................................AUCACAACCUCCUUGAGUGAG............. 7 0.125 ......................................................AUCACAACCUCCUUGAGUGA.............. 7 0.0497 ......................................................AUCACAACCUCCUUGAGUGAGC............ 4 0.278 .......................................................UCACAACCUCCUUGAGUGAGCGA.......... 11087 670 .......................................................UCACAACCUCCUUGAGUGAGCG........... 10061 370 .......................................................UCACAACCUCCUUGAGUGAGC............ 5884 181 .......................................................UCACAACCUCCUUGAGUGAG............. 1490 37.2 .......................................................UCACAACCUCCUUGAGUGAGCGAU......... 288 13.4 .......................................................UCACAACCUCCUUGAGUGA.............. 179 5.1 .......................................................UCACAACCUCCUUGAGUG............... 23 1.15 .......................................................UCACAACCUCCUUGAGUGAGCGAUA........ 3 0.0226 ........................................................CACAACCUCCUUGAGUGAGCGA.......... 4952 222 ........................................................CACAACCUCCUUGAGUGAGCG........... 2223 73.1 ........................................................CACAACCUCCUUGAGUGAGCGAU......... 523 24 ........................................................CACAACCUCCUUGAGUGAGC............ 444 8.56 ........................................................CACAACCUCCUUGAGUGAG............. 44 1.81 ........................................................CACAACCUCCUUGAGUGA.............. 6 0.415 ........................................................CACAACCUCCUUGAGUGAGCGAUA........ 5 0.144 .........................................................ACAACCUCCUUGAGUGAGCGA.......... 1760 64.4 .........................................................ACAACCUCCUUGAGUGAGCG........... 208 7.61 .........................................................ACAACCUCCUUGAGUGAGCGAU......... 162 7.31 .........................................................ACAACCUCCUUGAGUGAGC............ 47 2.14 .........................................................ACAACCUCCUUGAGUGAG............. 3 0.0915 .........................................................ACAACCUCCUUGAGUGA.............. 3 0.0347 ..........................................................CAACCUCCUUGAGUGAGCGA.......... 31 1.16 ..........................................................CAACCUCCUUGAGUGAGCGAUA........ 15 0.118 ..........................................................CAACCUCCUUGAGUGAGCGAU......... 12 0.251 ..........................................................CAACCUCCUUGAGUGAGCG........... 6 0.193 ...........................................................AACCUCCUUGAGUGAGCGA.......... 8 0.728 ...........................................................AACCUCCUUGAGUGAGCG........... 6 0.469 ............................................................ACCUCCUUGAGUGAGCGA.......... 6 0.28 ............................................................ACCUCCUUGAGUGAGCG........... 3 0.0347 ............................................................ACCUCCUUGAGUGAGCGAU......... 1 0.134 .............................................................CCUCCUUGAGUGAGCGA.......... 1 0.655 UGUCUUGCUUUGACUCACUCAACCUGGGUGUGAUGUUAUUUCGAUAUGGUAUCCAUCACAACCUCCUUGAGUGAGCGAUAGCAGGACA .(((((((((((.(((((((((...((.(((((((.((((.......))))..))))))).))...)))))))))))).)))))))). (-40.10)

           dme-miR-307a-5p                           dme-miR-307a-3p                       Count     RPM (mean number of reads per million)
...........GACUCACUCAACCUGGGUGUGA.......................................................  164       4.77
...........GACUCACUCAACCUGGGUGU.........................................................  48        0.864
...........GACUCACUCAACCUGGGUGUG........................................................  30        0.625
...........GACUCACUCAACCUGGGUGUGAU......................................................  1         0.0071
...........GACUCACUCAACCUGGGU...........................................................  1         0.0828
............ACUCACUCAACCUGGGUGUGAU......................................................  5933      193
............ACUCACUCAACCUGGGUGUGAUG.....................................................  890       37.5
............ACUCACUCAACCUGGGUGU.........................................................  211       8.8
............ACUCACUCAACCUGGGUGUG........................................................  92        1.17
............ACUCACUCAACCUGGGUGUGAUGU....................................................  11        0.393
............ACUCACUCAACCUGGGUG..........................................................  3         0.124
.............CUCACUCAACCUGGGUGUGA.......................................................  30        0.721
.............CUCACUCAACCUGGGUGUGAU......................................................  29        0.881
.............CUCACUCAACCUGGGUGUGAUG.....................................................  16        1.38
.............CUCACUCAACCUGGGUGUG........................................................  1         0.0686
..............UCACUCAACCUGGGUGUGAU......................................................  25        0.462
..............UCACUCAACCUGGGUGUGA.......................................................  4         0.624
..............UCACUCAACCUGGGUGUG........................................................  2         0.0159
...............CACUCAACCUGGGUGUGAU......................................................  4         0.0403
...............CACUCAACCUGGGUGUGA.......................................................  2         0.0142
................ACUCAACCUGGGUGUGAU......................................................  10        2.27
................ACUCAACCUGGGUGUGAUG.....................................................  5         2.58
.................CUCAACCUGGGUGUGAUGU....................................................  1         0.832
.................CUCAACCUGGGUGUGAUG.....................................................  1         0.0723
.................................UGUUAUUUCGAUAUGGUAUCCAUC...............................  15        1.81
.................................UGUUAUUUCGAUAUGGUAU....................................  1         0.0978
..................................GUUAUUUCGAUAUGGUAUCCAU................................  6         0.134
..................................GUUAUUUCGAUAUGGUAUCC..................................  1         0.0686
...................................UUAUUUCGAUAUGGUAUCCA.................................  30        0.782
...................................UUAUUUCGAUAUGGUAUCCAU................................  1         0.019
...................................UUAUUUCGAUAUGGUAUCC..................................  1         0.0071
....................................UAUUUCGAUAUGGUAUCCA.................................  1         0.0336
......................................................AUCACAACCUCCUUGAGUGAGCG...........  18        0.203
......................................................AUCACAACCUCCUUGAGUGAGCGA..........  9         0.759
......................................................AUCACAACCUCCUUGAGUGAG.............  7         0.125
......................................................AUCACAACCUCCUUGAGUGA..............  7         0.0497
......................................................AUCACAACCUCCUUGAGUGAGC............  4         0.278
.......................................................UCACAACCUCCUUGAGUGAGCGA..........  11087     670
.......................................................UCACAACCUCCUUGAGUGAGCG...........  10061     370
.......................................................UCACAACCUCCUUGAGUGAGC............  5884      181
.......................................................UCACAACCUCCUUGAGUGAG.............  1490      37.2
.......................................................UCACAACCUCCUUGAGUGAGCGAU.........  288       13.4
.......................................................UCACAACCUCCUUGAGUGA..............  179       5.1
.......................................................UCACAACCUCCUUGAGUG...............  23        1.15
.......................................................UCACAACCUCCUUGAGUGAGCGAUA........  3         0.0226
........................................................CACAACCUCCUUGAGUGAGCGA..........  4952      222
........................................................CACAACCUCCUUGAGUGAGCG...........  2223      73.1
........................................................CACAACCUCCUUGAGUGAGCGAU.........  523       24
........................................................CACAACCUCCUUGAGUGAGC............  444       8.56
........................................................CACAACCUCCUUGAGUGAG.............  44        1.81
........................................................CACAACCUCCUUGAGUGA..............  6         0.415
........................................................CACAACCUCCUUGAGUGAGCGAUA........  5         0.144
.........................................................ACAACCUCCUUGAGUGAGCGA..........  1760      64.4
.........................................................ACAACCUCCUUGAGUGAGCG...........  208       7.61
.........................................................ACAACCUCCUUGAGUGAGCGAU.........  162       7.31
.........................................................ACAACCUCCUUGAGUGAGC............  47        2.14
.........................................................ACAACCUCCUUGAGUGAG.............  3         0.0915
.........................................................ACAACCUCCUUGAGUGA..............  3         0.0347
..........................................................CAACCUCCUUGAGUGAGCGA..........  31        1.16
..........................................................CAACCUCCUUGAGUGAGCGAUA........  15        0.118
..........................................................CAACCUCCUUGAGUGAGCGAU.........  12        0.251
..........................................................CAACCUCCUUGAGUGAGCG...........  6         0.193
...........................................................AACCUCCUUGAGUGAGCGA..........  8         0.728
...........................................................AACCUCCUUGAGUGAGCG...........  6         0.469
............................................................ACCUCCUUGAGUGAGCGA..........  6         0.28
............................................................ACCUCCUUGAGUGAGCG...........  3         0.0347
............................................................ACCUCCUUGAGUGAGCGAU.........  1         0.134
.............................................................CCUCCUUGAGUGAGCGA..........  1         0.655
UGUCUUGCUUUGACUCACUCAACCUGGGUGUGAUGUUAUUUCGAUAUGGUAUCCAUCACAACCUCCUUGAGUGAGCGAUAGCAGGACA
.(((((((((((.(((((((((...((.(((((((.((((.......))))..))))))).))...)))))))))))).)))))))). (-40.10)

miRBase

Deep sequencing reads for stem-loop sequence MI0000418

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).