miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0000415
Stem-loop ID	dme-mir-9b
Reads	dme-miR-9b-5p dme-miR-9b-3p Count RPM (mean number of reads per million) .............CUCUUUGGUGAUUUUAGCUGUAU....................................................... 40 0.406 .............CUCUUUGGUGAUUUUAGCUGUAUG...................................................... 26 0.374 .............CUCUUUGGUGAUUUUAGCUGUAUGG..................................................... 9 0.0898 .............CUCUUUGGUGAUUUUAGCUGUA........................................................ 7 0.0739 .............CUCUUUGGUGAUUUUAGCUGUAUGGU.................................................... 3 0.0347 .............CUCUUUGGUGAUUUUAGC............................................................ 3 0.0347 ..............UCUUUGGUGAUUUUAGCUGUAU....................................................... 107238 3.42e+03 ..............UCUUUGGUGAUUUUAGCUGUAUG...................................................... 60996 2.52e+03 ..............UCUUUGGUGAUUUUAGCUGUA........................................................ 11600 514 ..............UCUUUGGUGAUUUUAGCUGUAUGG..................................................... 8696 308 ..............UCUUUGGUGAUUUUAGCUGU......................................................... 5226 166 ..............UCUUUGGUGAUUUUAGCUG.......................................................... 1504 52.6 ..............UCUUUGGUGAUUUUAGC............................................................ 393 5.36 ..............UCUUUGGUGAUUUUAGCU........................................................... 315 10.3 ..............UCUUUGGUGAUUUUAGCUGUAUGGU.................................................... 259 9.51 ..............UCUUUGGUGAUUUUAGCUGUAUGGUGUUU................................................ 16 0.173 ..............UCUUUGGUGAUUUUAGCUGUAUGGUG................................................... 14 1.01 ..............UCUUUGGUGAUUUUAGCUGUAUGGUGU.................................................. 14 0.646 ..............UCUUUGGUGAUUUUAGCUGUAUGGUGUU................................................. 2 0.126 ...............CUUUGGUGAUUUUAGCUGUAUGG..................................................... 242 9.99 ...............CUUUGGUGAUUUUAGCUGUAU....................................................... 201 6.96 ...............CUUUGGUGAUUUUAGCUGUAUG...................................................... 176 10.5 ...............CUUUGGUGAUUUUAGCUGUA........................................................ 22 0.392 ...............CUUUGGUGAUUUUAGCUGUAUGGU.................................................... 20 0.24 ...............CUUUGGUGAUUUUAGCUGU......................................................... 8 0.21 ................UUUGGUGAUUUUAGCUGUAU....................................................... 134 3.86 ................UUUGGUGAUUUUAGCUGUAUG...................................................... 130 7.8 ................UUUGGUGAUUUUAGCUGUAUGG..................................................... 26 1.13 ................UUUGGUGAUUUUAGCUGUA........................................................ 14 0.634 ................UUUGGUGAUUUUAGCUGU......................................................... 10 0.668 ................UUUGGUGAUUUUAGCUGUAUGGU.................................................... 1 0.00971 ................UUUGGUGAUUUUAGCUG.......................................................... 1 0.00666 .................UUGGUGAUUUUAGCUGUAU....................................................... 93 3.15 .................UUGGUGAUUUUAGCUGUAUG...................................................... 51 1.84 .................UUGGUGAUUUUAGCUGUAUGG..................................................... 7 0.0687 .................UUGGUGAUUUUAGCUGUA........................................................ 7 0.224 .................UUGGUGAUUUUAGCUGU......................................................... 4 0.0581 .................UUGGUGAUUUUAGCUGUAUGGU.................................................... 1 0.00436 ..................UGGUGAUUUUAGCUGUAU....................................................... 40 1.76 ..................UGGUGAUUUUAGCUGUAUG...................................................... 31 1.22 ..................UGGUGAUUUUAGCUGUA........................................................ 5 0.121 ..................UGGUGAUUUUAGCUGUAUGGUGU.................................................. 1 0.0978 ...................GGUGAUUUUAGCUGUAUG...................................................... 47 2.39 ...................GGUGAUUUUAGCUGUAU....................................................... 21 0.926 ...................GGUGAUUUUAGCUGUAUGG..................................................... 2 0.0865 ....................GUGAUUUUAGCUGUAUG...................................................... 44 3.3 ....................GUGAUUUUAGCUGUAUGG..................................................... 11 0.651 .....................UGAUUUUAGCUGUAUGG..................................................... 6 0.385 .................................UAUGGUGUUUAUGUAUAUUCC..................................... 1 0.22 .....................................GUGUUUAUGUAUAUUCCA.................................... 18 0.679 .....................................GUGUUUAUGUAUAUUCC..................................... 3 0.0394 ..........................................UAUGUAUAUUCCAUAGAGCUUUA.......................... 1 0.0978 ..........................................UAUGUAUAUUCCAUAGAGCUUUAU......................... 1 0.0403 ..................................................UUCCAUAGAGCUUUAUUACCAAAAAC............... 2 0.0159 ..................................................UUCCAUAGAGCUUUAUUACC..................... 1 0.00971 .....................................................CAUAGAGCUUUAUUACCAAAA................. 6 0.0695 .....................................................CAUAGAGCUUUAUUACCAAAAAC............... 1 0.00666 .....................................................CAUAGAGCUUUAUUACCAAAAA................ 1 0.00436 ......................................................AUAGAGCUUUAUUACCAAAAAC............... 537 8.05 ......................................................AUAGAGCUUUAUUACCAAAAA................ 109 1.51 ......................................................AUAGAGCUUUAUUACCAAAAACC.............. 108 5.45 ......................................................AUAGAGCUUUAUUACCAAAA................. 83 1.15 ......................................................AUAGAGCUUUAUUACCAAA.................. 39 0.526 ......................................................AUAGAGCUUUAUUACCAA................... 14 0.222 ......................................................AUAGAGCUUUAUUACCA.................... 10 0.103 .......................................................UAGAGCUUUAUUACCAAAAACC.............. 8748 243 .......................................................UAGAGCUUUAUUACCAAAAAC............... 2537 47 .......................................................UAGAGCUUUAUUACCAAAAA................ 760 11 .......................................................UAGAGCUUUAUUACCAAAA................. 418 7.84 .......................................................UAGAGCUUUAUUACCAAA.................. 146 2.22 .......................................................UAGAGCUUUAUUACCAAAAACCA............. 89 5.39 .......................................................UAGAGCUUUAUUACCAA................... 62 0.685 .......................................................UAGAGCUUUAUUACCAAAAACCAA............ 3 0.231 ........................................................AGAGCUUUAUUACCAAAAACC.............. 32 0.804 ........................................................AGAGCUUUAUUACCAAAAAC............... 18 0.172 ........................................................AGAGCUUUAUUACCAAAA................. 4 0.0772 ........................................................AGAGCUUUAUUACCAAAAA................ 2 0.0159 ........................................................AGAGCUUUAUUACCAAAAACCA............. 2 0.2 .........................................................GAGCUUUAUUACCAAAAACC.............. 7 0.818 .........................................................GAGCUUUAUUACCAAAAA................ 3 0.0347 ..........................................................AGCUUUAUUACCAAAAACC.............. 3 0.0347 ..........................................................AGCUUUAUUACCAAAAAC............... 1 0.0235 ...........................................................GCUUUAUUACCAAAAAC............... 8 0.0854 ...........................................................GCUUUAUUACCAAAAACC.............. 2 0.0425 ............................................................CUUUAUUACCAAAAACC.............. 1 0.00666 UGCAUAUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGGUGUUUAUGUAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUCUGCA .(((.((((((((...(((((((((...((((.(((((.((........)).))))).))))..)))))))))...))))))))...))). (-30.80)

               dme-miR-9b-5p                           dme-miR-9b-3p                         Count     RPM (mean number of reads per million)
.............CUCUUUGGUGAUUUUAGCUGUAU.......................................................  40        0.406
.............CUCUUUGGUGAUUUUAGCUGUAUG......................................................  26        0.374
.............CUCUUUGGUGAUUUUAGCUGUAUGG.....................................................  9         0.0898
.............CUCUUUGGUGAUUUUAGCUGUA........................................................  7         0.0739
.............CUCUUUGGUGAUUUUAGCUGUAUGGU....................................................  3         0.0347
.............CUCUUUGGUGAUUUUAGC............................................................  3         0.0347
..............UCUUUGGUGAUUUUAGCUGUAU.......................................................  107238    3.42e+03
..............UCUUUGGUGAUUUUAGCUGUAUG......................................................  60996     2.52e+03
..............UCUUUGGUGAUUUUAGCUGUA........................................................  11600     514
..............UCUUUGGUGAUUUUAGCUGUAUGG.....................................................  8696      308
..............UCUUUGGUGAUUUUAGCUGU.........................................................  5226      166
..............UCUUUGGUGAUUUUAGCUG..........................................................  1504      52.6
..............UCUUUGGUGAUUUUAGC............................................................  393       5.36
..............UCUUUGGUGAUUUUAGCU...........................................................  315       10.3
..............UCUUUGGUGAUUUUAGCUGUAUGGU....................................................  259       9.51
..............UCUUUGGUGAUUUUAGCUGUAUGGUGUUU................................................  16        0.173
..............UCUUUGGUGAUUUUAGCUGUAUGGUG...................................................  14        1.01
..............UCUUUGGUGAUUUUAGCUGUAUGGUGU..................................................  14        0.646
..............UCUUUGGUGAUUUUAGCUGUAUGGUGUU.................................................  2         0.126
...............CUUUGGUGAUUUUAGCUGUAUGG.....................................................  242       9.99
...............CUUUGGUGAUUUUAGCUGUAU.......................................................  201       6.96
...............CUUUGGUGAUUUUAGCUGUAUG......................................................  176       10.5
...............CUUUGGUGAUUUUAGCUGUA........................................................  22        0.392
...............CUUUGGUGAUUUUAGCUGUAUGGU....................................................  20        0.24
...............CUUUGGUGAUUUUAGCUGU.........................................................  8         0.21
................UUUGGUGAUUUUAGCUGUAU.......................................................  134       3.86
................UUUGGUGAUUUUAGCUGUAUG......................................................  130       7.8
................UUUGGUGAUUUUAGCUGUAUGG.....................................................  26        1.13
................UUUGGUGAUUUUAGCUGUA........................................................  14        0.634
................UUUGGUGAUUUUAGCUGU.........................................................  10        0.668
................UUUGGUGAUUUUAGCUGUAUGGU....................................................  1         0.00971
................UUUGGUGAUUUUAGCUG..........................................................  1         0.00666
.................UUGGUGAUUUUAGCUGUAU.......................................................  93        3.15
.................UUGGUGAUUUUAGCUGUAUG......................................................  51        1.84
.................UUGGUGAUUUUAGCUGUAUGG.....................................................  7         0.0687
.................UUGGUGAUUUUAGCUGUA........................................................  7         0.224
.................UUGGUGAUUUUAGCUGU.........................................................  4         0.0581
.................UUGGUGAUUUUAGCUGUAUGGU....................................................  1         0.00436
..................UGGUGAUUUUAGCUGUAU.......................................................  40        1.76
..................UGGUGAUUUUAGCUGUAUG......................................................  31        1.22
..................UGGUGAUUUUAGCUGUA........................................................  5         0.121
..................UGGUGAUUUUAGCUGUAUGGUGU..................................................  1         0.0978
...................GGUGAUUUUAGCUGUAUG......................................................  47        2.39
...................GGUGAUUUUAGCUGUAU.......................................................  21        0.926
...................GGUGAUUUUAGCUGUAUGG.....................................................  2         0.0865
....................GUGAUUUUAGCUGUAUG......................................................  44        3.3
....................GUGAUUUUAGCUGUAUGG.....................................................  11        0.651
.....................UGAUUUUAGCUGUAUGG.....................................................  6         0.385
.................................UAUGGUGUUUAUGUAUAUUCC.....................................  1         0.22
.....................................GUGUUUAUGUAUAUUCCA....................................  18        0.679
.....................................GUGUUUAUGUAUAUUCC.....................................  3         0.0394
..........................................UAUGUAUAUUCCAUAGAGCUUUA..........................  1         0.0978
..........................................UAUGUAUAUUCCAUAGAGCUUUAU.........................  1         0.0403
..................................................UUCCAUAGAGCUUUAUUACCAAAAAC...............  2         0.0159
..................................................UUCCAUAGAGCUUUAUUACC.....................  1         0.00971
.....................................................CAUAGAGCUUUAUUACCAAAA.................  6         0.0695
.....................................................CAUAGAGCUUUAUUACCAAAAAC...............  1         0.00666
.....................................................CAUAGAGCUUUAUUACCAAAAA................  1         0.00436
......................................................AUAGAGCUUUAUUACCAAAAAC...............  537       8.05
......................................................AUAGAGCUUUAUUACCAAAAA................  109       1.51
......................................................AUAGAGCUUUAUUACCAAAAACC..............  108       5.45
......................................................AUAGAGCUUUAUUACCAAAA.................  83        1.15
......................................................AUAGAGCUUUAUUACCAAA..................  39        0.526
......................................................AUAGAGCUUUAUUACCAA...................  14        0.222
......................................................AUAGAGCUUUAUUACCA....................  10        0.103
.......................................................UAGAGCUUUAUUACCAAAAACC..............  8748      243
.......................................................UAGAGCUUUAUUACCAAAAAC...............  2537      47
.......................................................UAGAGCUUUAUUACCAAAAA................  760       11
.......................................................UAGAGCUUUAUUACCAAAA.................  418       7.84
.......................................................UAGAGCUUUAUUACCAAA..................  146       2.22
.......................................................UAGAGCUUUAUUACCAAAAACCA.............  89        5.39
.......................................................UAGAGCUUUAUUACCAA...................  62        0.685
.......................................................UAGAGCUUUAUUACCAAAAACCAA............  3         0.231
........................................................AGAGCUUUAUUACCAAAAACC..............  32        0.804
........................................................AGAGCUUUAUUACCAAAAAC...............  18        0.172
........................................................AGAGCUUUAUUACCAAAA.................  4         0.0772
........................................................AGAGCUUUAUUACCAAAAA................  2         0.0159
........................................................AGAGCUUUAUUACCAAAAACCA.............  2         0.2
.........................................................GAGCUUUAUUACCAAAAACC..............  7         0.818
.........................................................GAGCUUUAUUACCAAAAA................  3         0.0347
..........................................................AGCUUUAUUACCAAAAACC..............  3         0.0347
..........................................................AGCUUUAUUACCAAAAAC...............  1         0.0235
...........................................................GCUUUAUUACCAAAAAC...............  8         0.0854
...........................................................GCUUUAUUACCAAAAACC..............  2         0.0425
............................................................CUUUAUUACCAAAAACC..............  1         0.00666
UGCAUAUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGGUGUUUAUGUAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUCUGCA
.(((.((((((((...(((((((((...((((.(((((.((........)).))))).))))..)))))))))...))))))))...))). (-30.80)

miRBase

Deep sequencing reads for stem-loop sequence MI0000415

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).