miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0000376
Stem-loop ID	dme-mir-210
Reads	dme-miR-210-5p dme-miR-210-3p Count RPM (mean number of reads per million) ..............CAGCUGCUGGCCACUGCACAAGAU.............................................................. 9 0.173 ..............CAGCUGCUGGCCACUGCACA.................................................................. 3 0.108 ..............CAGCUGCUGGCCACUGCACAAGA............................................................... 1 0.0216 ..............CAGCUGCUGGCCACUGCACAAG................................................................ 1 0.0382 ..............CAGCUGCUGGCCACUGCACAA................................................................. 1 0.0216 ...............AGCUGCUGGCCACUGCACAAGAU.............................................................. 7657 167 ...............AGCUGCUGGCCACUGCACAAGA............................................................... 6906 165 ...............AGCUGCUGGCCACUGCACAAG................................................................ 1085 26.9 ...............AGCUGCUGGCCACUGCACAA................................................................. 237 5.04 ...............AGCUGCUGGCCACUGCACAAGAUU............................................................. 106 5.05 ...............AGCUGCUGGCCACUGCACA.................................................................. 89 1.22 ...............AGCUGCUGGCCACUGCAC................................................................... 15 0.364 ................GCUGCUGGCCACUGCACAAGAU.............................................................. 104 1.88 ................GCUGCUGGCCACUGCACAAGA............................................................... 64 1.82 ................GCUGCUGGCCACUGCACAAGAUU............................................................. 14 0.183 ................GCUGCUGGCCACUGCACAAG................................................................ 10 0.209 ................GCUGCUGGCCACUGCACA.................................................................. 9 0.142 ................GCUGCUGGCCACUGCACAA................................................................. 1 0.0216 .................CUGCUGGCCACUGCACAAGAU.............................................................. 45 0.585 .................CUGCUGGCCACUGCACAAGA............................................................... 6 0.29 .................CUGCUGGCCACUGCACAAG................................................................ 2 0.0297 ..................UGCUGGCCACUGCACAAGAU.............................................................. 12 0.509 ..................UGCUGGCCACUGCACAAG................................................................ 3 0.0242 ..................UGCUGGCCACUGCACAAGAUU............................................................. 1 0.00807 ...................GCUGGCCACUGCACAAGAU.............................................................. 2 0.0433 ......................................UAGACUUAAGACUCUUGUGCGUGU...................................... 1 0.0216 ........................................GACUUAAGACUCUUGUGCGUGUGAC................................... 2 0.0433 ..................................................UCUUGUGCGUGUGACAGCGGCUAU.......................... 1 0.0382 ...................................................CUUGUGCGUGUGACAGCGGCUAU.......................... 43324 905 ...................................................CUUGUGCGUGUGACAGCGGCU............................ 13865 315 ...................................................CUUGUGCGUGUGACAGCGGCUA........................... 6768 144 ...................................................CUUGUGCGUGUGACAGCGGC............................. 1025 26.4 ...................................................CUUGUGCGUGUGACAGCGGCUAUU......................... 783 16.3 ...................................................CUUGUGCGUGUGACAGCGG.............................. 299 5.51 ...................................................CUUGUGCGUGUGACAGCG............................... 24 0.721 ...................................................CUUGUGCGUGUGACAGCGGCUAUUG........................ 5 0.294 ...................................................CUUGUGCGUGUGACAGCGGCUAUUGU....................... 2 0.188 ...................................................CUUGUGCGUGUGACAGC................................ 1 0.234 ....................................................UUGUGCGUGUGACAGCGGCUAU.......................... 37244 805 ....................................................UUGUGCGUGUGACAGCGGCU............................ 5810 141 ....................................................UUGUGCGUGUGACAGCGGCUA........................... 5740 147 ....................................................UUGUGCGUGUGACAGCGGCUAUU......................... 522 11.5 ....................................................UUGUGCGUGUGACAGCGGC............................. 66 2.05 ....................................................UUGUGCGUGUGACAGCGG.............................. 20 0.293 ....................................................UUGUGCGUGUGACAGCGGCUAUUG........................ 10 0.108 ....................................................UUGUGCGUGUGACAGCGGCUAUUGU....................... 2 0.102 .....................................................UGUGCGUGUGACAGCGGCUAU.......................... 121 2.23 .....................................................UGUGCGUGUGACAGCGGCU............................ 22 0.391 .....................................................UGUGCGUGUGACAGCGGCUA........................... 13 0.329 .....................................................UGUGCGUGUGACAGCGGCUAUU......................... 11 0.189 ......................................................GUGCGUGUGACAGCGGCU............................ 2 0.0327 .......................................................UGCGUGUGACAGCGGCUAU.......................... 4 0.103 ........................................................GCGUGUGACAGCGGCUAU.......................... 10 0.208 ........................................................GCGUGUGACAGCGGCUAUU......................... 1 0.0216 AAAGGUGCUUAUUGCAGCUGCUGGCCACUGCACAAGAUUAGACUUAAGACUCUUGUGCGUGUGACAGCGGCUAUUGUAAGAGGCCAUAGAAGCAACAGCC ...(((.(((((...((((((((..((((((((((((.............))))))))).))).))))))))...)))))..)))......((....)). (-38.12)

               dme-miR-210-5p                      dme-miR-210-3p                                     Count     RPM (mean number of reads per million)
..............CAGCUGCUGGCCACUGCACAAGAU..............................................................  9         0.173
..............CAGCUGCUGGCCACUGCACA..................................................................  3         0.108
..............CAGCUGCUGGCCACUGCACAAGA...............................................................  1         0.0216
..............CAGCUGCUGGCCACUGCACAAG................................................................  1         0.0382
..............CAGCUGCUGGCCACUGCACAA.................................................................  1         0.0216
...............AGCUGCUGGCCACUGCACAAGAU..............................................................  7657      167
...............AGCUGCUGGCCACUGCACAAGA...............................................................  6906      165
...............AGCUGCUGGCCACUGCACAAG................................................................  1085      26.9
...............AGCUGCUGGCCACUGCACAA.................................................................  237       5.04
...............AGCUGCUGGCCACUGCACAAGAUU.............................................................  106       5.05
...............AGCUGCUGGCCACUGCACA..................................................................  89        1.22
...............AGCUGCUGGCCACUGCAC...................................................................  15        0.364
................GCUGCUGGCCACUGCACAAGAU..............................................................  104       1.88
................GCUGCUGGCCACUGCACAAGA...............................................................  64        1.82
................GCUGCUGGCCACUGCACAAGAUU.............................................................  14        0.183
................GCUGCUGGCCACUGCACAAG................................................................  10        0.209
................GCUGCUGGCCACUGCACA..................................................................  9         0.142
................GCUGCUGGCCACUGCACAA.................................................................  1         0.0216
.................CUGCUGGCCACUGCACAAGAU..............................................................  45        0.585
.................CUGCUGGCCACUGCACAAGA...............................................................  6         0.29
.................CUGCUGGCCACUGCACAAG................................................................  2         0.0297
..................UGCUGGCCACUGCACAAGAU..............................................................  12        0.509
..................UGCUGGCCACUGCACAAG................................................................  3         0.0242
..................UGCUGGCCACUGCACAAGAUU.............................................................  1         0.00807
...................GCUGGCCACUGCACAAGAU..............................................................  2         0.0433
......................................UAGACUUAAGACUCUUGUGCGUGU......................................  1         0.0216
........................................GACUUAAGACUCUUGUGCGUGUGAC...................................  2         0.0433
..................................................UCUUGUGCGUGUGACAGCGGCUAU..........................  1         0.0382
...................................................CUUGUGCGUGUGACAGCGGCUAU..........................  43324     905
...................................................CUUGUGCGUGUGACAGCGGCU............................  13865     315
...................................................CUUGUGCGUGUGACAGCGGCUA...........................  6768      144
...................................................CUUGUGCGUGUGACAGCGGC.............................  1025      26.4
...................................................CUUGUGCGUGUGACAGCGGCUAUU.........................  783       16.3
...................................................CUUGUGCGUGUGACAGCGG..............................  299       5.51
...................................................CUUGUGCGUGUGACAGCG...............................  24        0.721
...................................................CUUGUGCGUGUGACAGCGGCUAUUG........................  5         0.294
...................................................CUUGUGCGUGUGACAGCGGCUAUUGU.......................  2         0.188
...................................................CUUGUGCGUGUGACAGC................................  1         0.234
....................................................UUGUGCGUGUGACAGCGGCUAU..........................  37244     805
....................................................UUGUGCGUGUGACAGCGGCU............................  5810      141
....................................................UUGUGCGUGUGACAGCGGCUA...........................  5740      147
....................................................UUGUGCGUGUGACAGCGGCUAUU.........................  522       11.5
....................................................UUGUGCGUGUGACAGCGGC.............................  66        2.05
....................................................UUGUGCGUGUGACAGCGG..............................  20        0.293
....................................................UUGUGCGUGUGACAGCGGCUAUUG........................  10        0.108
....................................................UUGUGCGUGUGACAGCGGCUAUUGU.......................  2         0.102
.....................................................UGUGCGUGUGACAGCGGCUAU..........................  121       2.23
.....................................................UGUGCGUGUGACAGCGGCU............................  22        0.391
.....................................................UGUGCGUGUGACAGCGGCUA...........................  13        0.329
.....................................................UGUGCGUGUGACAGCGGCUAUU.........................  11        0.189
......................................................GUGCGUGUGACAGCGGCU............................  2         0.0327
.......................................................UGCGUGUGACAGCGGCUAU..........................  4         0.103
........................................................GCGUGUGACAGCGGCUAU..........................  10        0.208
........................................................GCGUGUGACAGCGGCUAUU.........................  1         0.0216
AAAGGUGCUUAUUGCAGCUGCUGGCCACUGCACAAGAUUAGACUUAAGACUCUUGUGCGUGUGACAGCGGCUAUUGUAAGAGGCCAUAGAAGCAACAGCC
...(((.(((((...((((((((..((((((((((((.............))))))))).))).))))))))...)))))..)))......((....)). (-38.12)

miRBase

Deep sequencing reads for stem-loop sequence MI0000376

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).