miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0000370
Stem-loop ID	dme-mir-281-2
Reads	dme-miR-281-2-5p dme-miR-281-3p Count RPM (mean number of reads per million) ........GAAAUGAAGAGAGCUAUCCGU............................................................... 1 0.00436 ............UGAAGAGAGCUAUCCGUCGACA.......................................................... 18 0.923 ............UGAAGAGAGCUAUCCGUCGAC........................................................... 1 0.187 .............GAAGAGAGCUAUCCGUCGACAGU........................................................ 6 0.402 .............GAAGAGAGCUAUCCGUCGACA.......................................................... 4 0.276 .............GAAGAGAGCUAUCCGUCGACAG......................................................... 2 0.17 ..............AAGAGAGCUAUCCGUCGACAGUC....................................................... 3601 257 ..............AAGAGAGCUAUCCGUCGACAGU........................................................ 2450 159 ..............AAGAGAGCUAUCCGUCGACAG......................................................... 673 39 ..............AAGAGAGCUAUCCGUCGACA.......................................................... 360 18.3 ..............AAGAGAGCUAUCCGUCGACAGUCA...................................................... 146 21.1 ..............AAGAGAGCUAUCCGUCGAC........................................................... 69 3.64 ..............AAGAGAGCUAUCCGUCGACAGUCAA..................................................... 40 2.53 ..............AAGAGAGCUAUCCGUCGA............................................................ 17 1.75 ..............AAGAGAGCUAUCCGUCG............................................................. 4 0.41 ...............AGAGAGCUAUCCGUCGACAGUC....................................................... 51 3.13 ...............AGAGAGCUAUCCGUCGACAGU........................................................ 21 1.36 ...............AGAGAGCUAUCCGUCGACAG......................................................... 6 0.822 ...............AGAGAGCUAUCCGUCGACAGUCA...................................................... 2 0.0902 ...............AGAGAGCUAUCCGUCGACAGUCAA..................................................... 1 0.0791 ...............AGAGAGCUAUCCGUCGACA.......................................................... 1 0.0207 ................GAGAGCUAUCCGUCGACAGUC....................................................... 6 0.38 ................GAGAGCUAUCCGUCGACAGU........................................................ 4 0.146 ................GAGAGCUAUCCGUCGACAGUCA...................................................... 1 0.0207 .................AGAGCUAUCCGUCGACAGU........................................................ 5 0.177 .................AGAGCUAUCCGUCGACAG......................................................... 1 0.0798 .................AGAGCUAUCCGUCGACAGUCAA..................................................... 1 0.0326 .................AGAGCUAUCCGUCGACAGUC....................................................... 1 0.0723 .................AGAGCUAUCCGUCGACAGUCAAGUUA................................................. 1 0.042 ..................GAGCUAUCCGUCGACAGU........................................................ 3 0.18 ..................GAGCUAUCCGUCGACAGUC....................................................... 2 0.145 ..................GAGCUAUCCGUCGACAG......................................................... 1 0.0723 ...................AGCUAUCCGUCGACAGUC....................................................... 3 0.232 ....................GCUAUCCGUCGACAGUC....................................................... 2 0.145 ..............................GACAGUCAAGUUAAGACCGAUUGUA..................................... 3 0.0347 ..................................GUCAAGUUAAGACCGAUUGUAA.................................... 1 0.57 ....................................CAAGUUAAGACCGAUUGUAAUAC................................. 2 0.17 ..................................................UUGUAAUACUGUCAUGGAAUUGCU.................. 1 0.0371 .......................................................AUACUGUCAUGGAAUUGCUCUCU.............. 12 0.409 .......................................................AUACUGUCAUGGAAUUGCUCUC............... 10 0.493 .......................................................AUACUGUCAUGGAAUUG.................... 2 0.439 ........................................................UACUGUCAUGGAAUUGCUCUCUU............. 1 0.0336 .........................................................ACUGUCAUGGAAUUGCUCUCUUU............ 15 0.192 .........................................................ACUGUCAUGGAAUUGCUCUCUUUG........... 3 0.421 .........................................................ACUGUCAUGGAAUUGCUCUCUU............. 2 0.0413 .........................................................ACUGUCAUGGAAUUGCUCUCUUUGU.......... 1 0.121 ..........................................................CUGUCAUGGAAUUGCUCUCUUUG........... 3518 236 ..........................................................CUGUCAUGGAAUUGCUCUCUUU............ 1620 81.4 ..........................................................CUGUCAUGGAAUUGCUCUCUU............. 632 33.9 ..........................................................CUGUCAUGGAAUUGCUCUCUUUGU.......... 123 8.38 ..........................................................CUGUCAUGGAAUUGCUCUCU.............. 100 6.11 ..........................................................CUGUCAUGGAAUUGCUCU................ 18 1.11 ..........................................................CUGUCAUGGAAUUGCUCUC............... 14 1.15 ..........................................................CUGUCAUGGAAUUGCUCUCUUUGUA......... 1 0.0828 ...........................................................UGUCAUGGAAUUGCUCUCUUUGU.......... 9583 776 ...........................................................UGUCAUGGAAUUGCUCUCUUUG........... 4622 299 ...........................................................UGUCAUGGAAUUGCUCUCUUU............ 4453 259 ...........................................................UGUCAUGGAAUUGCUCUCUU............. 380 22.8 ...........................................................UGUCAUGGAAUUGCUCUCUUUGUA......... 126 8.37 ...........................................................UGUCAUGGAAUUGCUCUCU.............. 76 4.92 ...........................................................UGUCAUGGAAUUGCUCUC............... 24 2.47 ...........................................................UGUCAUGGAAUUGCUCU................ 3 0.239 ...........................................................UGUCAUGGAAUUGCUCUCUUUGUAU........ 1 0.0828 ............................................................GUCAUGGAAUUGCUCUCUUUG........... 62 4.56 ............................................................GUCAUGGAAUUGCUCUCUUUGU.......... 60 8.37 ............................................................GUCAUGGAAUUGCUCUCUUU............ 11 1.49 ............................................................GUCAUGGAAUUGCUCUCUU............. 5 0.0355 ............................................................GUCAUGGAAUUGCUCUCUUUGUA......... 1 0.0361 .............................................................UCAUGGAAUUGCUCUCUUUGU.......... 16 1.2 .............................................................UCAUGGAAUUGCUCUCUUUG........... 13 0.707 .............................................................UCAUGGAAUUGCUCUCUUUGUA......... 9 1.17 .............................................................UCAUGGAAUUGCUCUCUUU............ 5 0.324 ..............................................................CAUGGAAUUGCUCUCUUUGU.......... 6 0.213 ..............................................................CAUGGAAUUGCUCUCUUUG........... 1 0.0499 ...............................................................AUGGAAUUGCUCUCUUUG........... 3 0.984 ...............................................................AUGGAAUUGCUCUCUUUGU.......... 1 0.0723 ................................................................UGGAAUUGCUCUCUUUGU.......... 3 0.114 ................................................................UGGAAUUGCUCUCUUUG........... 1 0.0723 CGAAUUGUGAAAUGAAGAGAGCUAUCCGUCGACAGUCAAGUUAAGACCGAUUGUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUAACAUUCG (((((.((...(..((((((((..(((((.((((((..((((......)))).....)))))))))))...))))))))..)...))))))) (-32.60)

            dme-miR-281-2-5p                               dme-miR-281-3p                     Count     RPM (mean number of reads per million)
........GAAAUGAAGAGAGCUAUCCGU...............................................................  1         0.00436
............UGAAGAGAGCUAUCCGUCGACA..........................................................  18        0.923
............UGAAGAGAGCUAUCCGUCGAC...........................................................  1         0.187
.............GAAGAGAGCUAUCCGUCGACAGU........................................................  6         0.402
.............GAAGAGAGCUAUCCGUCGACA..........................................................  4         0.276
.............GAAGAGAGCUAUCCGUCGACAG.........................................................  2         0.17
..............AAGAGAGCUAUCCGUCGACAGUC.......................................................  3601      257
..............AAGAGAGCUAUCCGUCGACAGU........................................................  2450      159
..............AAGAGAGCUAUCCGUCGACAG.........................................................  673       39
..............AAGAGAGCUAUCCGUCGACA..........................................................  360       18.3
..............AAGAGAGCUAUCCGUCGACAGUCA......................................................  146       21.1
..............AAGAGAGCUAUCCGUCGAC...........................................................  69        3.64
..............AAGAGAGCUAUCCGUCGACAGUCAA.....................................................  40        2.53
..............AAGAGAGCUAUCCGUCGA............................................................  17        1.75
..............AAGAGAGCUAUCCGUCG.............................................................  4         0.41
...............AGAGAGCUAUCCGUCGACAGUC.......................................................  51        3.13
...............AGAGAGCUAUCCGUCGACAGU........................................................  21        1.36
...............AGAGAGCUAUCCGUCGACAG.........................................................  6         0.822
...............AGAGAGCUAUCCGUCGACAGUCA......................................................  2         0.0902
...............AGAGAGCUAUCCGUCGACAGUCAA.....................................................  1         0.0791
...............AGAGAGCUAUCCGUCGACA..........................................................  1         0.0207
................GAGAGCUAUCCGUCGACAGUC.......................................................  6         0.38
................GAGAGCUAUCCGUCGACAGU........................................................  4         0.146
................GAGAGCUAUCCGUCGACAGUCA......................................................  1         0.0207
.................AGAGCUAUCCGUCGACAGU........................................................  5         0.177
.................AGAGCUAUCCGUCGACAG.........................................................  1         0.0798
.................AGAGCUAUCCGUCGACAGUCAA.....................................................  1         0.0326
.................AGAGCUAUCCGUCGACAGUC.......................................................  1         0.0723
.................AGAGCUAUCCGUCGACAGUCAAGUUA.................................................  1         0.042
..................GAGCUAUCCGUCGACAGU........................................................  3         0.18
..................GAGCUAUCCGUCGACAGUC.......................................................  2         0.145
..................GAGCUAUCCGUCGACAG.........................................................  1         0.0723
...................AGCUAUCCGUCGACAGUC.......................................................  3         0.232
....................GCUAUCCGUCGACAGUC.......................................................  2         0.145
..............................GACAGUCAAGUUAAGACCGAUUGUA.....................................  3         0.0347
..................................GUCAAGUUAAGACCGAUUGUAA....................................  1         0.57
....................................CAAGUUAAGACCGAUUGUAAUAC.................................  2         0.17
..................................................UUGUAAUACUGUCAUGGAAUUGCU..................  1         0.0371
.......................................................AUACUGUCAUGGAAUUGCUCUCU..............  12        0.409
.......................................................AUACUGUCAUGGAAUUGCUCUC...............  10        0.493
.......................................................AUACUGUCAUGGAAUUG....................  2         0.439
........................................................UACUGUCAUGGAAUUGCUCUCUU.............  1         0.0336
.........................................................ACUGUCAUGGAAUUGCUCUCUUU............  15        0.192
.........................................................ACUGUCAUGGAAUUGCUCUCUUUG...........  3         0.421
.........................................................ACUGUCAUGGAAUUGCUCUCUU.............  2         0.0413
.........................................................ACUGUCAUGGAAUUGCUCUCUUUGU..........  1         0.121
..........................................................CUGUCAUGGAAUUGCUCUCUUUG...........  3518      236
..........................................................CUGUCAUGGAAUUGCUCUCUUU............  1620      81.4
..........................................................CUGUCAUGGAAUUGCUCUCUU.............  632       33.9
..........................................................CUGUCAUGGAAUUGCUCUCUUUGU..........  123       8.38
..........................................................CUGUCAUGGAAUUGCUCUCU..............  100       6.11
..........................................................CUGUCAUGGAAUUGCUCU................  18        1.11
..........................................................CUGUCAUGGAAUUGCUCUC...............  14        1.15
..........................................................CUGUCAUGGAAUUGCUCUCUUUGUA.........  1         0.0828
...........................................................UGUCAUGGAAUUGCUCUCUUUGU..........  9583      776
...........................................................UGUCAUGGAAUUGCUCUCUUUG...........  4622      299
...........................................................UGUCAUGGAAUUGCUCUCUUU............  4453      259
...........................................................UGUCAUGGAAUUGCUCUCUU.............  380       22.8
...........................................................UGUCAUGGAAUUGCUCUCUUUGUA.........  126       8.37
...........................................................UGUCAUGGAAUUGCUCUCU..............  76        4.92
...........................................................UGUCAUGGAAUUGCUCUC...............  24        2.47
...........................................................UGUCAUGGAAUUGCUCU................  3         0.239
...........................................................UGUCAUGGAAUUGCUCUCUUUGUAU........  1         0.0828
............................................................GUCAUGGAAUUGCUCUCUUUG...........  62        4.56
............................................................GUCAUGGAAUUGCUCUCUUUGU..........  60        8.37
............................................................GUCAUGGAAUUGCUCUCUUU............  11        1.49
............................................................GUCAUGGAAUUGCUCUCUU.............  5         0.0355
............................................................GUCAUGGAAUUGCUCUCUUUGUA.........  1         0.0361
.............................................................UCAUGGAAUUGCUCUCUUUGU..........  16        1.2
.............................................................UCAUGGAAUUGCUCUCUUUG...........  13        0.707
.............................................................UCAUGGAAUUGCUCUCUUUGUA.........  9         1.17
.............................................................UCAUGGAAUUGCUCUCUUU............  5         0.324
..............................................................CAUGGAAUUGCUCUCUUUGU..........  6         0.213
..............................................................CAUGGAAUUGCUCUCUUUG...........  1         0.0499
...............................................................AUGGAAUUGCUCUCUUUG...........  3         0.984
...............................................................AUGGAAUUGCUCUCUUUGU..........  1         0.0723
................................................................UGGAAUUGCUCUCUUUGU..........  3         0.114
................................................................UGGAAUUGCUCUCUUUG...........  1         0.0723
CGAAUUGUGAAAUGAAGAGAGCUAUCCGUCGACAGUCAAGUUAAGACCGAUUGUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUAACAUUCG
(((((.((...(..((((((((..(((((.((((((..((((......)))).....)))))))))))...))))))))..)...))))))) (-32.60)

miRBase

Deep sequencing reads for stem-loop sequence MI0000370

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).