Deep sequencing reads for stem-loop sequence MI0000304

Stem-loop ID

cel-mir-229

Reads

         cel-miR-229-5p                                                                cel-miR-229-3p                 Count     RPM (mean number of reads per million)
......CAAUGACACUGGUUAUCUUUUCCAUCG..................................................................................  6         6.88
......CAAUGACACUGGUUAUCUUUUCCA.....................................................................................  1         1.06
......CAAUGACACUGGUUAUCUUUUC.......................................................................................  1         1.25
.......AAUGACACUGGUUAUCUUUUCCAUCG..................................................................................  2436      2.96e+03
.......AAUGACACUGGUUAUCUUUUCCAUCGU.................................................................................  728       891
.......AAUGACACUGGUUAUCUUUUCCAUC...................................................................................  164       195
.......AAUGACACUGGUUAUCUUUUCC......................................................................................  103       126
.......AAUGACACUGGUUAUCUUUUCCA.....................................................................................  41        47.9
.......AAUGACACUGGUUAUCUUUUCCAU....................................................................................  39        51.2
.......AAUGACACUGGUUAUCUUUUC.......................................................................................  16        22.9
.......AAUGACACUGGUUAUCUUUU........................................................................................  7         8.94
.......AAUGACACUGGUUAUCUUU.........................................................................................  3         7.26
........AUGACACUGGUUAUCUUUUCCAUCG..................................................................................  36        40.4
........AUGACACUGGUUAUCUUUUCCAUCGU.................................................................................  7         9.13
........AUGACACUGGUUAUCUUUUCCAUC...................................................................................  4         3.65
........AUGACACUGGUUAUCUUUUCC......................................................................................  2         4.68
........AUGACACUGGUUAUCUUUUCCA.....................................................................................  2         0.927
........AUGACACUGGUUAUCUUUUC.......................................................................................  1         1.58
........AUGACACUGGUUAUCUUUUCCAU....................................................................................  1         3.1
.........UGACACUGGUUAUCUUUUCCAUCG..................................................................................  30        39
.........UGACACUGGUUAUCUUUUCCAUCGU.................................................................................  5         3.43
.........UGACACUGGUUAUCUUUUCCAUC...................................................................................  3         1.99
.........UGACACUGGUUAUCUUUUCC......................................................................................  2         3.15
.........UGACACUGGUUAUCUUUUC.......................................................................................  1         0.463
..........GACACUGGUUAUCUUUUCCAUCG..................................................................................  11        16.6
..........GACACUGGUUAUCUUUUCCAUCGU.................................................................................  2         3.47
..........GACACUGGUUAUCUUUUCCAUC...................................................................................  1         3.1
............CACUGGUUAUCUUUUCCAUCG..................................................................................  4         5.27
.............ACUGGUUAUCUUUUCCAUCGU.................................................................................  3         3.18
.............ACUGGUUAUCUUUUCCAUCG..................................................................................  1         1.9
..............CUGGUUAUCUUUUCCAUCG..................................................................................  3         4.86
..............CUGGUUAUCUUUUCCAUC...................................................................................  2         3.47
.............................................CAUUGAUUUUUUCCCCUUU...................................................  3         4.73
.....................................................................................CGAGAAAGGUAUCGGGUGUCAUAGC.....  3         4.86
......................................................................................GAGAAAGGUAUCGGGUGUCAUAG......  22        22.4
......................................................................................GAGAAAGGUAUCGGGUGUCAUAGC.....  20        22
......................................................................................GAGAAAGGUAUCGGGUGUCA.........  18        13.4
......................................................................................GAGAAAGGUAUCGGGUGUC..........  16        8.52
......................................................................................GAGAAAGGUAUCGGGUGUCAUA.......  12        11.4
......................................................................................GAGAAAGGUAUCGGGUGU...........  10        9.58
......................................................................................GAGAAAGGUAUCGGGUGUCAU........  6         3.89
.......................................................................................AGAAAGGUAUCGGGUGUCA.........  62        35
.......................................................................................AGAAAGGUAUCGGGUGUCAUAGC.....  60        50.9
.......................................................................................AGAAAGGUAUCGGGUGUC..........  57        45
.......................................................................................AGAAAGGUAUCGGGUGUCAUAG......  42        33.9
.......................................................................................AGAAAGGUAUCGGGUGUCAUA.......  16        10.1
.......................................................................................AGAAAGGUAUCGGGUGUCAU........  13        6.02
.......................................................................................AGAAAGGUAUCGGGUGU...........  8         5.93
........................................................................................GAAAGGUAUCGGGUGUCA.........  3         1.39
........................................................................................GAAAGGUAUCGGGUGUC..........  1         1.58
.........................................................................................AAAGGUAUCGGGUGUCAUAGC.....  1         1.25
CGCCGGCAAUGACACUGGUUAUCUUUUCCAUCGUGGAAUGCCCCCCAUUGAUUUUUUCCCCUUUUCGGGGGGAAAAAAUUGGAAACGAGAAAGGUAUCGGGUGUCAUAGCCGGCG
(((((((.((((((((.(.((((((((...((((((........)).(..((((((((((((.....))))))))))))..)..)))))))))))).).)))))))).))))))) (-57.80)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000024	3801	whole body	GEO : GSM378784		[ de Wit E et al.]
ER0000000203	112	adult	GEO : GSM604032	strain: N2 wild-type, age: Day 0	[ de Lencastre A et al.]
ER0000000204	154	adult	GEO : GSM604033	strain: N2 wild-type, age: Day 10	[ de Lencastre A et al.]
ER0000000205	315	adult	GEO : GSM604034	strain: daf-2(e1379) mutant, age: Day 0	[ de Lencastre A et al.]
ER0000000206	380	adult	GEO : GSM604035	strain: daf-2(e1379) mutant, age: Day 10	[ de Lencastre A et al.]
ER0000000212	941	whole body	GEO : GSM139137	mixed-stage	[ Ruby JG et al.]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).
3. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).