Deep sequencing reads for stem-loop sequence MI0000273

Stem-loop ID hsa-mir-183
Reads 
                          hsa-miR-183-5p                         hsa-miR-183-3p                                  Count     RPM (mean number of reads per million)
........................UGUAUGGCACUGGUAGAAUUCACU..............................................................  1         0.305
..........................UAUGGCACUGGUAGAAUUCACU..............................................................  76        49.4
..........................UAUGGCACUGGUAGAAUUCACUG.............................................................  30        17.6
..........................UAUGGCACUGGUAGAAUUCACUGU............................................................  5         5.32
..........................UAUGGCACUGGUAGAAUUC.................................................................  3         8.27
..........................UAUGGCACUGGUAGAAUUCAC...............................................................  1         2.4
...........................AUGGCACUGGUAGAAUUCACUG.............................................................  22        41.1
...........................AUGGCACUGGUAGAAUUCACUGU............................................................  11        41.4
...........................AUGGCACUGGUAGAAUUCACU..............................................................  10        20.7
...........................AUGGCACUGGUAGAAUUC.................................................................  1         2.86
............................UGGCACUGGUAGAAUUCACUG.............................................................  1         0.181
..................................................................UGAAUUACCGAAGGGCCAUAA.......................  26        3.95
..................................................................UGAAUUACCGAAGGGCCAUA........................  6         0.722
..................................................................UGAAUUACCGAAGGGCCAUAAA......................  5         0.968
CCGCAGAGUGUGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCAGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCACGA
.......(((.((.(((((((((((.((((((..(((((..(((((((((((......)))..)))))))))))))....)))))).))))))))).))....))))).. (-41.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 15embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 35embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000106 16melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000109 32melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 4melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 19melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000114 41melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000138 2squamous cell GEO : GSM532874 [ Witten D et al.]
ER0000000140 5squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000150 22squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000156 55squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000160 8squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000162 1squamous cell GEO : GSM532898 [ Witten D et al.]
ER0000000164 8squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000166 1squamous cell GEO : GSM532902 [ Witten D et al.]
ER0000000168 3adenosquamous cell GEO : GSM532904 [ Witten D et al.]
ER0000000172 1squamous cell GEO : GSM532908 [ Witten D et al.]
ER0000000174 13squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000176 2adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000177 1 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000178 6squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 10squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000184 28squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000186 1squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000262 19 GEO : GSM337570 antibody: anti-Ago1 4B8
ER0000000263 11 GEO : GSM337571 antibody: anti-Ago2 11A9
ER0000000264 17 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000265 1 GEO : GSM368182 tissue: clinically negative of NPC [ Zhu JY et al.]
ER0000000266 10 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).