Deep sequencing reads for stem-loop sequence MI0000266

Stem-loop ID

hsa-mir-10a

Reads

                     hsa-miR-10a-5p                          hsa-miR-10a-3p                                     Count     RPM (mean number of reads per million)
....................AUACCCUGUAGAUCCGAAUUUGU...................................................................  83        2.88
....................AUACCCUGUAGAUCCGAAUUUGUG..................................................................  6         0.0351
....................AUACCCUGUAGAUCCGAAUUUG....................................................................  2         0.0211
.....................UACCCUGUAGAUCCGAAUUUGU...................................................................  13513     212
.....................UACCCUGUAGAUCCGAAUUUGUG..................................................................  5875      77.6
.....................UACCCUGUAGAUCCGAAUUUG....................................................................  424       6.8
.....................UACCCUGUAGAUCCGAAUUUGUGU.................................................................  333       5.41
.....................UACCCUGUAGAUCCGAAU.......................................................................  195       2.31
.....................UACCCUGUAGAUCCGAA........................................................................  76        0.917
.....................UACCCUGUAGAUCCGAAUUU.....................................................................  64        0.946
.....................UACCCUGUAGAUCCGAAUU......................................................................  30        0.408
.....................UACCCUGUAGAUCCGAAUUUGUGUA................................................................  2         0.0371
......................ACCCUGUAGAUCCGAAUUUGUG..................................................................  333       11.4
......................ACCCUGUAGAUCCGAAUUUGU...................................................................  157       4.02
......................ACCCUGUAGAUCCGAAUUUGUGU.................................................................  108       2.14
......................ACCCUGUAGAUCCGAAUUUG....................................................................  12        0.0915
......................ACCCUGUAGAUCCGAAU.......................................................................  10        0.105
......................ACCCUGUAGAUCCGAAUUU.....................................................................  2         0.0545
......................ACCCUGUAGAUCCGAAUUUGUGUAA...............................................................  2         0.0371
......................ACCCUGUAGAUCCGAAUUUGUGUA................................................................  2         0.0259
.......................CCCUGUAGAUCCGAAUUUGU...................................................................  11        64.8
.......................CCCUGUAGAUCCGAAUUUGUGU.................................................................  3         0.182
.......................CCCUGUAGAUCCGAAUUUGUG..................................................................  2         5.81
.......................CCCUGUAGAUCCGAAUUU.....................................................................  1         2
..........................UGUAGAUCCGAAUUUGU...................................................................  1         38.2
...........................................................UCACAAAUUCGUAUCUAGGGGAA............................  1         0.17
............................................................CACAAAUUCGUAUCUAGGGGAA............................  1         0.17
..............................................................CAAAUUCGUAUCUAGGGGAAU...........................  29        3.02
..............................................................CAAAUUCGUAUCUAGGGGAA............................  3         0.191
..............................................................CAAAUUCGUAUCUAGGGG..............................  2         3.19
..............................................................CAAAUUCGUAUCUAGGGGAAUA..........................  2         0.0211
...............................................................AAAUUCGUAUCUAGGGGAAUAU.........................  4         0.0488
...............................................................AAAUUCGUAUCUAGGGGAAU...........................  3         0.0494
...............................................................AAAUUCGUAUCUAGGGGAAUA..........................  2         0.0211
................................................................AAUUCGUAUCUAGGGGAAUAU.........................  5         1.46
GAUCUGUCUGUCUUCUGUAUAUACCCUGUAGAUCCGAAUUUGUGUAAGGAAUUUUGUGGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACAUAAACACUCCGCUCU
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...)))......... (-32.39)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000001	14	embryonic stem cell	GEO : GSM541796		[ Bar M et al.]
ER0000000002	410	embryonic stem cell	GEO : GSM541797		[ Bar M et al.]
ER0000000103	9582	melanoblast	GEO : GSM458535		[ Stark MS et al.]
ER0000000104	3295	melanocyte	GEO : GSM458536		[ Stark MS et al.]
ER0000000105	1818		GEO : GSM458537	cell line: primary giant congental nevus	[ Stark MS et al.]
ER0000000106	240	melanoma	GEO : GSM458538	cell line: secondary acral melanoma	[ Stark MS et al.]
ER0000000107	1114	melanoma	GEO : GSM458539	cell line: secondary mucosal melanoma	[ Stark MS et al.]
ER0000000108	2353	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000109	20	melanoma	GEO : GSM458541	cell line: primary uveal melanoma	[ Stark MS et al.]
ER0000000110	1614	melanoma	GEO : GSM458542	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000111	1892	melanoma	GEO : GSM458543	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000112	1542	melanoma	GEO : GSM458544	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000113	3430	melanoma	GEO : GSM458545	cell line: secondary cutaneous melanoma from a chronically sun-damaged body site	[ Stark MS et al.]
ER0000000114	1467	melanoma	GEO : GSM458546	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000135	3		GEO : GSM532871	normal cervix	[ Witten D et al.]
ER0000000136	7	squamous cell	GEO : GSM532872		[ Witten D et al.]
ER0000000139	11		GEO : GSM532875	normal cervix	[ Witten D et al.]
ER0000000141	3		GEO : GSM532877	normal cervix	[ Witten D et al.]
ER0000000142	3	squamous cell	GEO : GSM532878		[ Witten D et al.]
ER0000000147	18		GEO : GSM532883	normal cervix	[ Witten D et al.]
ER0000000148	3	squamous cell	GEO : GSM532884		[ Witten D et al.]
ER0000000149	6		GEO : GSM532885	normal cervix	[ Witten D et al.]
ER0000000155	261		GEO : GSM532891	normal cervix	[ Witten D et al.]
ER0000000157	5		GEO : GSM532893	normal cervix	[ Witten D et al.]
ER0000000159	114		GEO : GSM532895	normal cervix	[ Witten D et al.]
ER0000000160	1	squamous cell	GEO : GSM532896		[ Witten D et al.]
ER0000000161	49		GEO : GSM532897	normal cervix	[ Witten D et al.]
ER0000000162	1	squamous cell	GEO : GSM532898		[ Witten D et al.]
ER0000000163	184		GEO : GSM532899	normal cervix	[ Witten D et al.]
ER0000000165	13		GEO : GSM532901	normal cervix	[ Witten D et al.]
ER0000000167	182		GEO : GSM532903	normal cervix	[ Witten D et al.]
ER0000000169	1		GEO : GSM532905	normal cervix	[ Witten D et al.]
ER0000000170	1	adenosquamous cell	GEO : GSM532906		[ Witten D et al.]
ER0000000171	35		GEO : GSM532907	normal cervix	[ Witten D et al.]
ER0000000172	1	squamous cell	GEO : GSM532908		[ Witten D et al.]
ER0000000173	160		GEO : GSM532909	normal cervix	[ Witten D et al.]
ER0000000175	2		GEO : GSM532911	normal cervix	[ Witten D et al.]
ER0000000176	23	adenosquamous cell	GEO : GSM532912		[ Witten D et al.]
ER0000000177	74		GEO : GSM532913	normal cervix	[ Witten D et al.]
ER0000000178	1	squamous cell	GEO : GSM532914		[ Witten D et al.]
ER0000000179	54		GEO : GSM532915	normal cervix	[ Witten D et al.]
ER0000000181	11		GEO : GSM532917	normal cervix	[ Witten D et al.]
ER0000000182	2	squamous cell	GEO : GSM532918		[ Witten D et al.]
ER0000000184	10	squamous cell	GEO : GSM532920		[ Witten D et al.]
ER0000000185	90		GEO : GSM532921	normal cervix	[ Witten D et al.]
ER0000000187	36		GEO : GSM532923	normal cervix	[ Witten D et al.]
ER0000000189	1	whole body	GEO : GSM532925	normal cervix	[ Witten D et al.]
ER0000000190	1	squamous cell	GEO : GSM532926		[ Witten D et al.]
ER0000000193	6		GEO : GSM532929	normal cervix	[ Witten D et al.]
ER0000000194	1	squamous cell	GEO : GSM532930		[ Witten D et al.]
ER0000000262	6		GEO : GSM337570	antibody: anti-Ago1 4B8
ER0000000263	22		GEO : GSM337571	antibody: anti-Ago2 11A9

References

1. PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).