Deep sequencing reads for stem-loop sequence MI0000243

Stem-loop ID mmu-mir-200b
Reads 
       mmu-miR-200b-5p                     mmu-miR-200b-3p               Count     RPM (mean number of reads per million)
.......CCAUCUUACUGGGCAGCAUUGGA........................................  1         0.0025
.......CCAUCUUACUGGGCAGCAUU...........................................  1         0.0025
........CAUCUUACUGGGCAGCAUUGGA........................................  1098      6.77
........CAUCUUACUGGGCAGCAUU...........................................  854       2.27
........CAUCUUACUGGGCAGCAUUGG.........................................  822       7.42
........CAUCUUACUGGGCAGCAUUG..........................................  326       1.11
........CAUCUUACUGGGCAGCAUUGGAU.......................................  184       0.732
........CAUCUUACUGGGCAGCAUUGGAUA......................................  9         0.0361
........CAUCUUACUGGGCAGCAU............................................  6         0.0156
........CAUCUUACUGGGCAGCAUUGGAUAG.....................................  1         0.00221
.........AUCUUACUGGGCAGCAUUGGAU.......................................  110       0.674
.........AUCUUACUGGGCAGCAUUGGA........................................  100       0.526
.........AUCUUACUGGGCAGCAUUGG.........................................  34        0.127
.........AUCUUACUGGGCAGCAUUGGAUA......................................  21        0.0565
.........AUCUUACUGGGCAGCAUUG..........................................  20        0.0551
..........UCUUACUGGGCAGCAUUGGA........................................  4         0.119
..........UCUUACUGGGCAGCAUUGGAUA......................................  1         0.0021
..........UCUUACUGGGCAGCAUUGG.........................................  1         0.00741
..........UCUUACUGGGCAGCAUUGGAU.......................................  1         0.00221
...........CUUACUGGGCAGCAUUGG.........................................  3         0.0331
...........CUUACUGGGCAGCAUUGGAU.......................................  2         0.0121
...........CUUACUGGGCAGCAUUGGA........................................  1         0.0118
............UUACUGGGCAGCAUUGGA........................................  2         0.332
..............ACUGGGCAGCAUUGGAU.......................................  1         0.00952
.......................................AUCUCUAAUACUGCCUGGUAAUGAUGA....  16        0.379
........................................UCUCUAAUACUGCCUGGUAAUGAUGA....  9         0.0603
.........................................CUCUAAUACUGCCUGGUAAUGAUGAC...  1         0.00257
..........................................UCUAAUACUGCCUGGUAAUGAUGA....  503       7.91
..........................................UCUAAUACUGCCUGGUAAUGAUGAC...  39        0.431
..........................................UCUAAUACUGCCUGGUAAUGAUG.....  13        0.0867
..........................................UCUAAUACUGCCUGGUAAUGA.......  10        0.0999
..........................................UCUAAUACUGCCUGGUAAUGAU......  8         0.0564
..........................................UCUAAUACUGCCUGGUA...........  2         0.0123
...........................................CUAAUACUGCCUGGUAAUGAUGA....  23        0.596
...........................................CUAAUACUGCCUGGUAAUGAUGAC...  14        0.0852
...........................................CUAAUACUGCCUGGUAAUGAUG.....  7         0.0425
...........................................CUAAUACUGCCUGGUAAUGAU......  5         0.11
............................................UAAUACUGCCUGGUAAUGAUGAC...  33168     269
............................................UAAUACUGCCUGGUAAUGAUGA....  20241     252
............................................UAAUACUGCCUGGUAAUGAUG.....  5736      89.2
............................................UAAUACUGCCUGGUAAUGAU......  2438      23.6
............................................UAAUACUGCCUGGUAAUGAUGACG..  1120      3.88
............................................UAAUACUGCCUGGUAAUGA.......  350       4.4
............................................UAAUACUGCCUGGUAAUG........  46        0.829
............................................UAAUACUGCCUGGUAAU.........  8         0.107
............................................UAAUACUGCCUGGUAAUGAUGACGG.  1         0.0025
.............................................AAUACUGCCUGGUAAUGAUGAC...  2185      8.83
.............................................AAUACUGCCUGGUAAUGAUGA....  130       9.85
.............................................AAUACUGCCUGGUAAUGAU......  99        0.409
.............................................AAUACUGCCUGGUAAUGAUGACG..  69        0.249
.............................................AAUACUGCCUGGUAAUGAUG.....  36        0.355
.............................................AAUACUGCCUGGUAAUGA.......  3         0.00648
.............................................AAUACUGCCUGGUAAUG........  1         0.0104
..............................................AUACUGCCUGGUAAUGAUGAC...  2351      7.09
..............................................AUACUGCCUGGUAAUGAUGACG..  160       0.484
..............................................AUACUGCCUGGUAAUGAUGA....  120       1.7
..............................................AUACUGCCUGGUAAUGAUG.....  36        0.718
..............................................AUACUGCCUGGUAAUGAU......  5         0.0739
...............................................UACUGCCUGGUAAUGAUGAC...  130       0.47
...............................................UACUGCCUGGUAAUGAUGA....  65        0.221
...............................................UACUGCCUGGUAAUGAUGACG..  9         0.0258
...............................................UACUGCCUGGUAAUGAUG.....  3         0.0336
................................................ACUGCCUGGUAAUGAUGAC...  16        0.166
................................................ACUGCCUGGUAAUGAUGA....  9         0.102
................................................ACUGCCUGGUAAUGAUG.....  4         0.0384
.................................................CUGCCUGGUAAUGAUGAC...  9         0.359
.................................................CUGCCUGGUAAUGAUGA....  7         0.0639
..................................................UGCCUGGUAAUGAUGAC...  5         0.0348
GCCGUGGCCAUCUUACUGGGCAGCAUUGGAUAGUGUCUGAUCUCUAAUACUGCCUGGUAAUGAUGACGGC
(((((...((((((((..(((((.((((((.(........).)))))).)))))..)))).))))))))) (-31.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 13ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 733ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 624ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 63ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 23testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 111testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 112testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 15testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 35brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 149brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 193brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 45brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 776brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 100whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 718whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 762whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 128whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 2414whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 3448whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 3971whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 3656whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 3853whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 3703whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 3429whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 12690whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 288embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1584embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1858embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 226embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 76embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 242embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 244embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 26embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 234embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 557embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 706embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 82bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 41bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 175spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 160spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 781spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 24spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 68spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 72spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 16spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 513peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 66spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 25lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 35lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 50bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 72bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 689bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 423peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 62peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 50bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 19bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 34spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 131thymus GEO : GSM539856
ER0000000238 219spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 471spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 58spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 323lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 113lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 58lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 285spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 96lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 183lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 3226 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 6heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 23brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1738lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 111liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 6521kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 7694pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 5202skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 86skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 20342salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 39testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 755ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 63spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 481lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).