Deep sequencing reads for stem-loop sequence MI0000194

Stem-loop ID

ath-MIR162a

Reads

                                                                                          ath-miR162a                                        Count     RPM (mean number of reads per million)
...UUGGAAGAAGAGUGAGAGUCGC...................................................................................................................  1         0.0903
.........................UGGAGGCAGCGGUUCAUCGAUC.............................................................................................  593       161
.........................UGGAGGCAGCGGUUCAUCGAU..............................................................................................  20        1.81
..........................GGAGGCAGCGGUUCAUCGAUC.............................................................................................  60        251
...........................GAGGCAGCGGUUCAUCGAUC.............................................................................................  34        8.87
...........................GAGGCAGCGGUUCAUCGAUCU............................................................................................  5         13.7
............................AGGCAGCGGUUCAUCGAUCUC...........................................................................................  3         21.4
............................AGGCAGCGGUUCAUCGAUCUCU..........................................................................................  1         5.89
.............................GGCAGCGGUUCAUCGAUCUCU..........................................................................................  7         8.5
....................................................................................UAGAUCGAUAAACCUCUGCAU...................................  2         0.181
.....................................................................................AGAUCGAUAAACCUCUGCAUC..................................  3         22.8
......................................................................................GAUCGAUAAACCUCUGCAUC..................................  1         0.0903
......................................................................................GAUCGAUAAACCUCUGCAUCC.................................  1         6.19
.......................................................................................AUCGAUAAACCUCUGCAUCCAG...............................  60        59.3
.......................................................................................AUCGAUAAACCUCUGCAUCCA................................  29        218
........................................................................................UCGAUAAACCUCUGCAUCCAG...............................  3943      3.71e+03
........................................................................................UCGAUAAACCUCUGCAUCCAGC..............................  40        87.2
........................................................................................UCGAUAAACCUCUGCAUCCA................................  15        58
........................................................................................UCGAUAAACCUCUGCAUC..................................  6         16.4
........................................................................................UCGAUAAACCUCUGCAUCC.................................  2         0.181
........................................................................................UCGAUAAACCUCUGCAU...................................  1         2.71
.........................................................................................CGAUAAACCUCUGCAUCCAG...............................  50        76.5
..........................................................................................GAUAAACCUCUGCAUCCAG...............................  2         5.98
..............................................................................................AACCUCUGCAUCCAGCGUUUG.........................  28        217
...............................................................................................ACCUCUGCAUCCAGCGUUUG.........................  1         7.59
UAGUUGGAAGAAGAGUGAGAGUCGCUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGUGAACACAUUAAAAAUGUAAAAGCAUGAAUAGAUCGAUAAACCUCUGCAUCCAGCGUUUGCCUCUUGUAUCUUUCUUAUUGACUU
.(((..(((((((((..((((.(((((((.((((.((((.((((((((.(((.(((....((((.....))))....))).))).)))))))).)))).)))).))))))).....))))..).)).))))).)..))). (-57.50)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	3866	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	73	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	17	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	34	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	317	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	97	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	470	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	95	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).