Deep sequencing reads for stem-loop sequence MI0000163

Stem-loop ID mmu-mir-137
Reads 
        mmu-miR-137-5p                      mmu-miR-137-3p                 Count     RPM (mean number of reads per million)
.......GACGGGUAUUCUUGGGUGGAU.............................................  4         0.0346
.......GACGGGUAUUCUUGGGUGGAUAAU..........................................  1         0.00494
.......GACGGGUAUUCUUGGGUGGAUAA...........................................  1         0.0256
.......GACGGGUAUUCUUGGGUGGAUA............................................  1         0.0256
........ACGGGUAUUCUUGGGUGGAUAAU..........................................  74        1.37
........ACGGGUAUUCUUGGGUGGAU.............................................  62        1.08
........ACGGGUAUUCUUGGGUGGAUAA...........................................  14        0.0996
........ACGGGUAUUCUUGGGUGGAUA............................................  9         0.158
........ACGGGUAUUCUUGGGUGGAUAAUA.........................................  8         0.108
........ACGGGUAUUCUUGGGUGGA..............................................  3         0.0435
..........GGGUAUUCUUGGGUGGAUAAU..........................................  1         0.0193
..........GGGUAUUCUUGGGUGGAUAAUACGGAU....................................  1         0.00518
..............AUUCUUGGGUGGAUAAU..........................................  10        0.107
..............AUUCUUGGGUGGAUAAUA.........................................  2         0.0104
...............UUCUUGGGUGGAUAAUA.........................................  1         0.00518
..............................UACGGAUUACGUUGUUAUUGCUU....................  1         0.0193
...........................................GUUAUUGCUUAAGAAUACGCGU........  3         0.0297
...........................................GUUAUUGCUUAAGAAUACGCGUAG......  2         0.0251
...........................................GUUAUUGCUUAAGAAUACGCGUA.......  1         0.00518
............................................UUAUUGCUUAAGAAUACGCGUAG......  30548     576
............................................UUAUUGCUUAAGAAUACGCGU........  20830     384
............................................UUAUUGCUUAAGAAUACGCGUA.......  6078      111
............................................UUAUUGCUUAAGAAUACGCGUAGU.....  1136      25.4
............................................UUAUUGCUUAAGAAUACGC..........  332       7.16
............................................UUAUUGCUUAAGAAUACGCG.........  319       6.02
............................................UUAUUGCUUAAGAAUACG...........  154       3.4
............................................UUAUUGCUUAAGAAUAC............  123       2.18
............................................UUAUUGCUUAAGAAUACGCGUAGUCG...  3         0.0148
............................................UUAUUGCUUAAGAAUACGCGUAGUC....  2         0.00989
.............................................UAUUGCUUAAGAAUACGCGUAG......  3205      57.5
.............................................UAUUGCUUAAGAAUACGCGUAGU.....  3132      65.3
.............................................UAUUGCUUAAGAAUACGCGU........  994       16.8
.............................................UAUUGCUUAAGAAUACGCGUA.......  455       7.88
.............................................UAUUGCUUAAGAAUACGC..........  34        0.452
.............................................UAUUGCUUAAGAAUACGCG.........  15        0.238
.............................................UAUUGCUUAAGAAUACG...........  15        0.289
..............................................AUUGCUUAAGAAUACGCGUAG......  836       13.7
..............................................AUUGCUUAAGAAUACGCGUAGU.....  297       4.69
..............................................AUUGCUUAAGAAUACGCGU........  109       1.58
..............................................AUUGCUUAAGAAUACGCGUA.......  60        1.09
..............................................AUUGCUUAAGAAUACGC..........  2         0.0245
...............................................UUGCUUAAGAAUACGCGUAGU.....  118       2.08
...............................................UUGCUUAAGAAUACGCGUAG......  62        1.33
...............................................UUGCUUAAGAAUACGCGU........  33        0.347
...............................................UUGCUUAAGAAUACGCGUA.......  7         0.0714
...............................................UUGCUUAAGAAUACGCGUAGUC....  1         0.00518
................................................UGCUUAAGAAUACGCGUAG......  5         0.0641
................................................UGCUUAAGAAUACGCGU........  2         0.038
................................................UGCUUAAGAAUACGCGUAGU.....  2         0.0104
................................................UGCUUAAGAAUACGCGUA.......  1         0.00518
.................................................GCUUAAGAAUACGCGUAG......  32        0.366
.................................................GCUUAAGAAUACGCGUAGU.....  9         0.0607
.................................................GCUUAAGAAUACGCGUA.......  6         0.097
..................................................CUUAAGAAUACGCGUAG......  3895      67.4
..................................................CUUAAGAAUACGCGUAGU.....  212       3.74
...................................................UUAAGAAUACGCGUAGU.....  299       7.98
CUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGG
((((((..(((.(((((((((((..(.(((((((.....)).))))))..))))))))))).)))..)))))) (-32.40)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 4ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 3ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 1testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 1testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 1testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000036 2253brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 9098brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 12686brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 1874brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 47709brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 17whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 150whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 176whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 38whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 567whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 690whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 772whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 699whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 692whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 771whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 644whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 2539whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 207embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1010embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1439embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 199embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 2embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 3embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 2embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 2embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 9embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 10embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000247 3 GEO : GSM539866 strain: C57BL/6-129
ER0000000250 666brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000252 2liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000257 3salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).