Deep sequencing reads for stem-loop sequence MI0000158

Stem-loop ID mmu-mir-132
Reads 
    mmu-miR-132-5p                       mmu-miR-132-3p              Count     RPM (mean number of reads per million)
...CAACCGUGGCUUUCGAUUGUUA.........................................  3         0.00691
...CAACCGUGGCUUUCGAUUGUU..........................................  2         0.0544
....AACCGUGGCUUUCGAUUGUUA.........................................  677       4.68
....AACCGUGGCUUUCGAUUGUU..........................................  381       2.49
....AACCGUGGCUUUCGAUUGUUAC........................................  226       1.77
....AACCGUGGCUUUCGAUUGU...........................................  52        0.365
....AACCGUGGCUUUCGAUUGUUACU.......................................  50        0.287
....AACCGUGGCUUUCGAUUG............................................  2         0.00375
.....ACCGUGGCUUUCGAUUGUUACU.......................................  4494      28.3
.....ACCGUGGCUUUCGAUUGUUAC........................................  922       6.7
.....ACCGUGGCUUUCGAUUGUUA.........................................  242       1.15
.....ACCGUGGCUUUCGAUUGUU..........................................  82        0.576
.....ACCGUGGCUUUCGAUUGU...........................................  12        0.0565
.....ACCGUGGCUUUCGAUUGUUACUG......................................  5         0.0317
.....ACCGUGGCUUUCGAUUGUUACUGU.....................................  1         0.0668
......CCGUGGCUUUCGAUUGUUACU.......................................  15        0.0765
......CCGUGGCUUUCGAUUGUUAC........................................  4         0.00921
......CCGUGGCUUUCGAUUGUUA.........................................  3         0.00691
.......CGUGGCUUUCGAUUGUUACU.......................................  11        0.13
.......CGUGGCUUUCGAUUGUUA.........................................  7         0.0869
.......CGUGGCUUUCGAUUGUUAC........................................  4         0.0174
........GUGGCUUUCGAUUGUUACU.......................................  9         0.0395
........GUGGCUUUCGAUUGUUA.........................................  4         0.00921
........GUGGCUUUCGAUUGUUAC........................................  1         0.0668
.........UGGCUUUCGAUUGUUACU.......................................  2         0.0109
.........UGGCUUUCGAUUGUUAC........................................  2         0.0137
..........GGCUUUCGAUUGUUACU.......................................  3         0.00691
..........GGCUUUCGAUUGUUACUGUG....................................  1         0.00388
.........................CUGUGGGAACCGGAGGUA.......................  1         0.00857
.................................ACCGGAGGUAACAGUCUACAG............  1         0.00857
........................................GUAACAGUCUACAGCCAUGGUCG...  3         0.0132
.........................................UAACAGUCUACAGCCAUGGUCG...  14347     95.5
.........................................UAACAGUCUACAGCCAUGGUC....  2953      21.7
.........................................UAACAGUCUACAGCCAUGGU.....  808       4.55
.........................................UAACAGUCUACAGCCAUGG......  579       3.52
.........................................UAACAGUCUACAGCCAUGGUCGC..  91        0.735
.........................................UAACAGUCUACAGCCAUG.......  12        0.0941
.........................................UAACAGUCUACAGCCAUGGUCGCC.  1         0.0022
..........................................AACAGUCUACAGCCAUGGUCG...  898       4.84
..........................................AACAGUCUACAGCCAUGGUC....  108       0.575
..........................................AACAGUCUACAGCCAUGGU.....  47        0.215
..........................................AACAGUCUACAGCCAUGGUCGC..  25        0.209
..........................................AACAGUCUACAGCCAUGG......  22        0.0865
..........................................AACAGUCUACAGCCAUG.......  1         0.0023
...........................................ACAGUCUACAGCCAUGGUCG...  505       1.42
...........................................ACAGUCUACAGCCAUGGUCGC..  30        0.297
...........................................ACAGUCUACAGCCAUGGUC....  17        0.0496
...........................................ACAGUCUACAGCCAUGG......  10        0.0434
...........................................ACAGUCUACAGCCAUGGU.....  1         0.0459
............................................CAGUCUACAGCCAUGGUCG...  14        0.138
............................................CAGUCUACAGCCAUGGU.....  7         0.0597
............................................CAGUCUACAGCCAUGGUC....  4         0.08
.............................................AGUCUACAGCCAUGGUCG...  8         0.0247
.............................................AGUCUACAGCCAUGGUC....  8         0.0339
..............................................GUCUACAGCCAUGGUCG...  14        0.0832
GGGCAACCGUGGCUUUCGAUUGUUACUGUGGGAACCGGAGGUAACAGUCUACAGCCAUGGUCGCCC
((((.(((((((((...((((((((((.(((...)))..))))))))))...))))))))).)))) (-37.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 10ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 24ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 5ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 1testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 3testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 10testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 3testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 979brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 1897brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 5147brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 631brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 19156brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 4whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 11whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 26whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 7whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 66whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 100whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 139whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 129whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 140whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 140whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 114whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 386whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 5embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 25embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 52embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 1embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 40embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 45embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 87embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 6embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 69embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 74embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 187embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 10bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 23bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 20spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 12spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 35spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 34spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 100spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 89spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 15spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 10peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 2spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 20lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 9lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 73bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 90bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 21bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 21peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 2peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 71bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 184bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 130spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 23thymus GEO : GSM539856
ER0000000238 156spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 49spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 112spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 106lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 146lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 247lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 457spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 96lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 350lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 21 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 183 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 11heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 3365brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 14lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 11liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 62kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 7pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 44skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 34skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 33salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 6testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 63ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 27spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 128lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).