Deep sequencing reads for stem-loop sequence MI0000150

Stem-loop ID mmu-mir-124-3
Reads 
     mmu-miR-124-5p                       mmu-miR-124-3p               Count     RPM (mean number of reads per million)
.....CGUGUUCACAGCGGACCUUGAU.........................................  1030      13.6
.....CGUGUUCACAGCGGACCUUGA..........................................  511       4.45
.....CGUGUUCACAGCGGACCUUGAUU........................................  221       2.22
.....CGUGUUCACAGCGGACCUU............................................  29        1.04
.....CGUGUUCACAGCGGACCUUG...........................................  28        0.148
.....CGUGUUCACAGCGGACC..............................................  4         0.0343
......GUGUUCACAGCGGACCUUGAU.........................................  20        0.327
......GUGUUCACAGCGGACCUUGAUU........................................  4         0.11
......GUGUUCACAGCGGACCUUGA..........................................  4         0.0196
.......UGUUCACAGCGGACCUUGAUU........................................  9         0.0424
.......UGUUCACAGCGGACCUUGAUUU.......................................  5         0.0227
.......UGUUCACAGCGGACCUUGAU.........................................  1         0.00316
........GUUCACAGCGGACCUUGAU.........................................  3         0.0819
........GUUCACAGCGGACCUUGAUU........................................  1         0.00316
.........UUCACAGCGGACCUUGA..........................................  1         0.0118
..........UCACAGCGGACCUUGAU.........................................  4         0.0451
..........UCACAGCGGACCUUGAUU........................................  1         0.00357
..........................UUUAAUGUCUAUACAAUUAAGG....................  1         0.0118
.....................................UACAAUUAAGGCACGCGGUGAAUGC......  1         0.0118
......................................ACAAUUAAGGCACGCGGUGAAUGCCAA...  2         0.0661
......................................ACAAUUAAGGCACGCGGUGAAUGC......  1         0.00316
......................................ACAAUUAAGGCACGCGGUGAAUGCCA....  1         0.00316
.......................................CAAUUAAGGCACGCGGUGAAU........  10        0.0435
.......................................CAAUUAAGGCACGCGGUGAAUGC......  7         0.148
.......................................CAAUUAAGGCACGCGGUGAAUGCC.....  5         0.127
.......................................CAAUUAAGGCACGCGGUGAAUGCCAA...  4         0.0313
.......................................CAAUUAAGGCACGCGGUGAAUGCCA....  3         0.0467
........................................AAUUAAGGCACGCGGUGAAUGCCA....  44        0.267
........................................AAUUAAGGCACGCGGUGAAUGCC.....  15        0.22
........................................AAUUAAGGCACGCGGUGAAUGCCAA...  14        0.15
........................................AAUUAAGGCACGCGGUGAAUGC......  3         0.0194
.........................................AUUAAGGCACGCGGUGAAUGCCA....  357       3.48
.........................................AUUAAGGCACGCGGUGAAUGCC.....  153       1.49
.........................................AUUAAGGCACGCGGUGAAUGCCAA...  76        0.708
.........................................AUUAAGGCACGCGGUGAAUGC......  43        0.413
.........................................AUUAAGGCACGCGGUGAAUG.......  8         0.0251
.........................................AUUAAGGCACGCGGUGAAU........  2         0.0148
.........................................AUUAAGGCACGCGGUGA..........  1         0.0128
.........................................AUUAAGGCACGCGGUGAAUGCCAAG..  1         0.00316
..........................................UUAAGGCACGCGGUGAAUGCCA....  78528     934
..........................................UUAAGGCACGCGGUGAAUGC......  35035     406
..........................................UUAAGGCACGCGGUGAAUGCC.....  32926     397
..........................................UUAAGGCACGCGGUGAAUGCCAA...  17432     246
..........................................UUAAGGCACGCGGUGAAU........  3547      39.6
..........................................UUAAGGCACGCGGUGAAUG.......  1945      19.5
..........................................UUAAGGCACGCGGUGAAUGCCAAG..  315       3.55
..........................................UUAAGGCACGCGGUGAAUGCCAAGA.  236       3.29
..........................................UUAAGGCACGCGGUGAA.........  40        1.02
...........................................UAAGGCACGCGGUGAAUGCCA....  312401    3.7e+03
...........................................UAAGGCACGCGGUGAAUGCCAA...  156313    2.15e+03
...........................................UAAGGCACGCGGUGAAUGC......  100500    1.24e+03
...........................................UAAGGCACGCGGUGAAUGCC.....  61913     784
...........................................UAAGGCACGCGGUGAAUGCCAAG..  4649      56.9
...........................................UAAGGCACGCGGUGAAUGCCAAGA.  2326      27.2
...........................................UAAGGCACGCGGUGAAUG.......  1648      19.6
...........................................UAAGGCACGCGGUGAAU........  1384      20.6
...........................................UAAGGCACGCGGUGAAUGCCAAGAG  1         0.0132
............................................AAGGCACGCGGUGAAUGCCA....  8298      78.4
............................................AAGGCACGCGGUGAAUGCCAA...  7297      89.8
............................................AAGGCACGCGGUGAAUGC......  2159      20.9
............................................AAGGCACGCGGUGAAUGCC.....  1452      14
............................................AAGGCACGCGGUGAAUGCCAAG..  83        0.749
............................................AAGGCACGCGGUGAAUG.......  37        0.346
............................................AAGGCACGCGGUGAAUGCCAAGA.  17        0.159
.............................................AGGCACGCGGUGAAUGCCA....  1347      15.5
.............................................AGGCACGCGGUGAAUGCCAA...  762       10.3
.............................................AGGCACGCGGUGAAUGCC.....  262       2.6
.............................................AGGCACGCGGUGAAUGC......  168       1.44
.............................................AGGCACGCGGUGAAUGCCAAGA.  3         0.0181
.............................................AGGCACGCGGUGAAUGCCAAG..  2         0.0166
..............................................GGCACGCGGUGAAUGCCAA...  121       1.77
..............................................GGCACGCGGUGAAUGCCA....  94        1.49
..............................................GGCACGCGGUGAAUGCC.....  10        0.0613
...............................................GCACGCGGUGAAUGCCA....  342       4.33
...............................................GCACGCGGUGAAUGCCAA...  238       3.38
...............................................GCACGCGGUGAAUGCCAAG..  6         0.0474
...............................................GCACGCGGUGAAUGCCAAGA.  4         0.0213
................................................CACGCGGUGAAUGCCAA...  3574      57.9
................................................CACGCGGUGAAUGCCAAG..  59        1.13
................................................CACGCGGUGAAUGCCAAGA.  13        0.0878
.................................................ACGCGGUGAAUGCCAAG..  14        0.117
.................................................ACGCGGUGAAUGCCAAGA.  4         0.0359
..................................................CGCGGUGAAUGCCAAGA.  10        0.0801
CUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAG
(((((.((((((((.(((..((((((((............))))))))..))).))))))))).)))) (-25.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 2ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 2ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 42testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 161testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 117testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 17testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 39085brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 168986brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 194822brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 21289brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 546829brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 113whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 964whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 853whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 133whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 2026whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 3048whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 3507whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 3950whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 4215whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 4167whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 4027whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 10717whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 6258embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 35012embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 34801embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 3816embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 10embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 17embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 33embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 3embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 27embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 46embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 60embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000222 3spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 3peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 2lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000230 2bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000234 5bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 1bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000237 1thymus GEO : GSM539856
ER0000000241 2lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 4lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 1lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000245 1lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 5lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 4031 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 10heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 48817brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 16lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 30liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 35kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 1pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 11skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000257 10salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 40testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 2ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 12spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).